Variant report

Variant	rs10898662
Chromosome Location	chr11:87003377-87003378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10792943	0.90[AFR][1000 genomes]
rs10898658	0.81[AMR][1000 genomes]
rs10898667	0.90[AFR][1000 genomes]
rs10898669	0.83[AFR][1000 genomes]
rs10898673	0.90[AFR][1000 genomes]
rs10898674	0.90[AFR][1000 genomes]
rs10898675	0.93[AFR][1000 genomes]
rs10898677	0.81[AFR][1000 genomes]
rs11235047	1.00[JPT][hapmap]
rs11235084	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235085	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235087	0.90[AFR][1000 genomes]
rs11235088	0.90[AFR][1000 genomes]
rs11235104	0.90[AFR][1000 genomes]
rs11235106	0.90[AFR][1000 genomes]
rs11235107	0.93[AFR][1000 genomes]
rs11235109	0.90[AFR][1000 genomes]
rs11604458	0.90[AFR][1000 genomes]
rs12272915	1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12276145	0.83[AFR][1000 genomes]
rs12279942	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281655	0.83[AFR][1000 genomes]
rs12290541	0.87[AMR][1000 genomes]
rs12294015	0.90[AFR][1000 genomes]
rs12295057	0.83[AFR][1000 genomes]
rs12295149	0.87[AMR][1000 genomes]
rs12361047	0.90[AFR][1000 genomes]
rs12363349	0.90[AFR][1000 genomes]
rs12363892	0.81[AFR][1000 genomes]
rs12790362	0.90[AFR][1000 genomes]
rs2186727	0.90[AFR][1000 genomes]
rs4536247	0.90[AFR][1000 genomes]
rs4944698	0.90[AFR][1000 genomes]
rs4944700	0.90[AFR][1000 genomes]
rs4944701	0.90[AFR][1000 genomes]
rs61904503	0.85[AMR][1000 genomes]
rs6592342	1.00[JPT][hapmap]
rs7113000	0.81[AMR][1000 genomes]
rs7125381	0.90[AFR][1000 genomes]
rs7126948	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1045057	chr11:86794670-87033779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv541121	chr11:86794670-87033779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv898064	chr11:86864277-87013438	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2829956	chr11:86872504-87025059	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv898068	chr11:86930270-87005969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
9	nsv555712	chr11:86961994-87007030	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
10	nsv898072	chr11:86963330-87005969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
11	nsv898073	chr11:86963330-87013438	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
12	nsv898074	chr11:86963330-87034696	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	n/a
13	nsv555713	chr11:86971548-87013438	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86991600-87014200	Weak transcription	HepG2	liver
2	chr11:86992000-87017600	Weak transcription	Aorta	Aorta
3	chr11:86992600-87020600	Weak transcription	Liver	Liver
4	chr11:86993200-87009000	Weak transcription	HUVEC	blood vessel
5	chr11:86994000-87014200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:86995200-87018800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:86995800-87007200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:86996800-87004400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:86996800-87010200	Weak transcription	K562	blood
10	chr11:86996800-87013000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:87001800-87004400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr11:87002200-87004400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr11:87002200-87004400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr11:87002200-87004400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr11:87002200-87006800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr11:87002600-87003600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:87002800-87004400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr11:87002800-87004600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:87002800-87011800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:87003000-87003400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr11:87003000-87004000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr11:87003000-87004600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr11:87003200-87011800	Weak transcription	H9 Cell Line	embryonic stem cell

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