Variant report

Variant	rs10898861
Chromosome Location	chr11:72352646-72352647
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72352379..72355272-chr11:72384070..72386668,2	K562	blood:

Variant related genes	Relation type
ENSG00000186642	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1038377	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs151449	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs341038	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs341050	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs342321	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs366068	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3781923	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3781926	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs401999	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs455631	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs458437	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs459309	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs459546	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs460633	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs464853	0.96[ASN][1000 genomes]
rs676845	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs676911	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	esv1832864	chr11:72270965-72389125	Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv832207	chr11:72272750-72469122	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
4	nsv523601	chr11:72281884-72430935	Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
5	nsv825991	chr11:72320642-72385221	Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	esv3413076	chr11:72349804-72353302	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72348800-72352800	Weak transcription	Gastric	stomach
2	chr11:72350600-72352800	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
3	chr11:72350800-72352800	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr11:72350800-72353000	Active TSS	Spleen	Spleen
5	chr11:72351000-72352800	Active TSS	Esophagus	oesophagus
6	chr11:72351000-72353000	Active TSS	Psoas Muscle	Psoas
7	chr11:72351000-72354200	Active TSS	Left Ventricle	heart
8	chr11:72351000-72354400	Active TSS	Right Atrium	heart
9	chr11:72351200-72352800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
10	chr11:72351200-72353000	Flanking Active TSS	Colon Smooth Muscle	Colon
11	chr11:72351400-72353000	Bivalent Enhancer	Fetal Brain Male	brain
12	chr11:72351400-72354400	Active TSS	Brain Angular Gyrus	brain
13	chr11:72351600-72352800	Flanking Active TSS	Rectal Smooth Muscle	rectum
14	chr11:72351800-72352800	Bivalent/Poised TSS	Adipose Nuclei	Adipose
15	chr11:72351800-72352800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
16	chr11:72351800-72352800	Bivalent/Poised TSS	Fetal Stomach	stomach
17	chr11:72351800-72354200	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr11:72351800-72354400	Active TSS	Ovary	ovary
19	chr11:72352000-72352800	Active TSS	Liver	Liver
20	chr11:72352000-72352800	Flanking Active TSS	Brain Cingulate Gyrus	brain
21	chr11:72352000-72352800	Bivalent/Poised TSS	Colonic Mucosa	Colon
22	chr11:72352000-72353000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:72352200-72352800	Bivalent/Poised TSS	Hela-S3	cervix
24	chr11:72352200-72352800	Bivalent/Poised TSS	HSMMtube	muscle
25	chr11:72352200-72353000	Active TSS	Pancreas	Pancrea
26	chr11:72352200-72353400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
27	chr11:72352200-72353600	Bivalent Enhancer	Placenta	Placenta
28	chr11:72352400-72352800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
29	chr11:72352400-72352800	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
30	chr11:72352400-72352800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
31	chr11:72352400-72352800	Active TSS	Right Ventricle	heart
32	chr11:72352400-72352800	Active TSS	Stomach Smooth Muscle	stomach
33	chr11:72352400-72353000	Flanking Active TSS	Brain Hippocampus Middle	brain
34	chr11:72352400-72353000	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
35	chr11:72352400-72353200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:72352400-72353200	Flanking Active TSS	Brain Anterior Caudate	brain
37	chr11:72352600-72352800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:72352600-72352800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
39	chr11:72352600-72352800	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
40	chr11:72352600-72352800	Bivalent Enhancer	HUVEC	blood vessel
41	chr11:72352600-72353000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:72352600-72353000	Bivalent Enhancer	Brain Germinal Matrix	brain
43	chr11:72352600-72353000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
44	chr11:72352600-72353000	Bivalent/Poised TSS	HSMM	muscle
45	chr11:72352600-72353200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
46	chr11:72352600-72353400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
47	chr11:72352600-72353400	Flanking Active TSS	Lung	lung
48	chr11:72352600-72354800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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