Variant report

Variant	rs10898881
Chromosome Location	chr11:72527018-72527019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1000620	0.88[CHD][hapmap];0.80[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10431171	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10431172	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10751213	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10751215	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10751216	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10793048	0.88[ASW][hapmap];0.95[YRI][hapmap]
rs10793049	0.91[YRI][hapmap]
rs10793055	0.82[YRI][hapmap]
rs10898877	0.83[ASN][1000 genomes]
rs10898879	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10898880	0.82[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes]
rs10898885	0.82[ASW][hapmap];0.95[YRI][hapmap]
rs10898894	0.82[YRI][hapmap]
rs11235592	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11235594	0.88[CHD][hapmap];0.80[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11235596	0.81[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11235612	0.82[YRI][hapmap]
rs12294533	0.82[YRI][hapmap]
rs1864653	0.83[ASN][1000 genomes]
rs1975109	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2303969	0.82[YRI][hapmap]
rs35343925	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35668754	0.86[ASN][1000 genomes]
rs35752694	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4459331	0.88[CHD][hapmap];0.80[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4459332	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs485099	0.83[ASN][1000 genomes]
rs4944796	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs4944797	0.82[ASN][1000 genomes]
rs4944800	0.83[ASN][1000 genomes]
rs4944802	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4944805	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6592486	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6592490	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6592500	0.95[YRI][hapmap]
rs677231	0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs7110719	0.86[ASN][1000 genomes]
rs7943424	0.91[YRI][hapmap]
rs7952617	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72523200-72527200	Active TSS	Primary monocytes fromperipheralblood	blood
2	chr11:72524400-72527200	Active TSS	GM12878-XiMat	blood
3	chr11:72524600-72527200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:72524600-72527200	Active TSS	Monocytes-CD14+_RO01746	blood
5	chr11:72524800-72527400	Active TSS	Primary T cells from cord blood	blood
6	chr11:72525000-72527600	Active TSS	Rectal Smooth Muscle	rectum
7	chr11:72525800-72527200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:72525800-72527200	Flanking Active TSS	Fetal Thymus	thymus
9	chr11:72525800-72527600	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr11:72525800-72527600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
11	chr11:72525800-72528000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:72525800-72528200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:72526000-72527200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr11:72526000-72527400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:72526000-72527400	Flanking Active TSS	Dnd41	blood
16	chr11:72526000-72527600	Flanking Active TSS	Primary B cells from peripheral blood	blood
17	chr11:72526000-72527600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
18	chr11:72526200-72527800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr11:72526200-72528000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:72526200-72532800	Weak transcription	Aorta	Aorta
21	chr11:72526400-72527200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
22	chr11:72526400-72527200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
23	chr11:72526400-72527400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:72526400-72527400	Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr11:72526400-72527400	Weak transcription	Brain Anterior Caudate	brain
26	chr11:72526400-72527400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr11:72526400-72527600	Enhancers	Fetal Heart	heart
28	chr11:72526400-72527600	Enhancers	Fetal Lung	lung
29	chr11:72526400-72527800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:72526400-72527800	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr11:72526400-72527800	Enhancers	Liver	Liver
32	chr11:72526400-72527800	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr11:72526400-72527800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:72526400-72527800	Enhancers	Brain Substantia Nigra	brain
35	chr11:72526400-72527800	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr11:72526400-72527800	Enhancers	HSMMtube	muscle
37	chr11:72526400-72527800	Enhancers	NH-A	brain
38	chr11:72526400-72528000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:72526400-72529000	Weak transcription	Brain Angular Gyrus	brain
40	chr11:72526400-72529000	Weak transcription	Gastric	stomach
41	chr11:72526400-72531600	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr11:72526400-72531600	Weak transcription	Fetal Brain Female	brain
43	chr11:72526400-72532800	Weak transcription	Fetal Kidney	kidney
44	chr11:72526600-72527200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:72526600-72527200	Enhancers	Fetal Intestine Small	intestine
46	chr11:72526600-72527200	Enhancers	Stomach Mucosa	stomach
47	chr11:72526600-72527400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:72526600-72527400	Enhancers	Fetal Stomach	stomach
49	chr11:72526600-72527600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr11:72526600-72527600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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