Variant report

Variant	rs10899102
Chromosome Location	chr11:75429572-75429573
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr11:75429513-75429708	HepG2	liver:	n/a	chr11:75429657-75429672
2	MYBL2	chr11:75429417-75430240	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75273373..75275096-chr11:75428137..75429945,2	MCF-7	breast:

Variant related genes	Relation type
MOGAT2	TF binding region
ENSG00000149257	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10793123	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899101	0.88[ASN][1000 genomes]
rs11236498	0.90[ASN][1000 genomes]
rs1145700	0.87[EUR][1000 genomes]
rs1219536	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1219537	0.88[EUR][1000 genomes]
rs1219538	0.88[EUR][1000 genomes]
rs1219539	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1238914	0.89[EUR][1000 genomes]
rs17245228	0.90[ASN][1000 genomes]
rs473013	0.88[EUR][1000 genomes]
rs473791	0.88[EUR][1000 genomes]
rs554202	0.89[EUR][1000 genomes]
rs623693	0.89[EUR][1000 genomes]
rs650861	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75428000-75429600	Enhancers	Liver	Liver
2	chr11:75428200-75431200	Enhancers	Gastric	stomach
3	chr11:75428600-75430200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:75428600-75430600	Active TSS	Duodenum Mucosa	Duodenum
5	chr11:75428600-75431000	Enhancers	Stomach Mucosa	stomach
6	chr11:75428800-75429600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:75428800-75429600	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr11:75428800-75430000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr11:75428800-75430200	Enhancers	Right Ventricle	heart
10	chr11:75428800-75430400	Enhancers	Adipose Nuclei	Adipose
11	chr11:75428800-75431000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:75428800-75431000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr11:75428800-75431200	Enhancers	Left Ventricle	heart
14	chr11:75428800-75431200	Active TSS	Rectal Smooth Muscle	rectum
15	chr11:75429000-75429800	Enhancers	Right Atrium	heart
16	chr11:75429000-75430200	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr11:75429000-75430400	Enhancers	Fetal Heart	heart
18	chr11:75429000-75431600	Flanking Active TSS	Fetal Intestine Large	intestine
19	chr11:75429000-75431600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
20	chr11:75429200-75429800	Active TSS	Small Intestine	intestine
21	chr11:75429400-75429600	Active TSS	Fetal Intestine Small	intestine
22	chr11:75429400-75429600	Active TSS	Fetal Stomach	stomach
23	chr11:75429400-75430000	Flanking Active TSS	Colonic Mucosa	Colon
24	chr11:75429400-75430600	Enhancers	GM12878-XiMat	blood
25	chr11:75429400-75430800	Flanking Active TSS	HepG2	liver

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