Variant report

Variant	rs10899268
Chromosome Location	chr11:76434121-76434122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:76434040-76434190	HAc	cerebellar:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76432736..76434565-chr11:76442976..76445333,2	MCF-7	breast:
2	chr11:76432458..76434385-chr11:76518685..76520926,2	K562	blood:
3	chr11:76433483..76435648-chr11:76441734..76444276,2	K562	blood:
4	chr11:76426123..76429227-chr11:76433055..76436273,3	K562	blood:
5	chr11:76430934..76434920-chr11:76435609..76442633,7	MCF-7	breast:
6	chr11:76431666..76434446-chr11:76757030..76758684,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10899269	0.91[EUR][1000 genomes]
rs10899271	0.91[EUR][1000 genomes]
rs11236908	0.90[CEU][hapmap];0.80[CHB][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs11236909	0.90[CEU][hapmap];0.80[CHB][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs11236910	0.90[CEU][hapmap];0.80[CHB][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs1893306	0.95[CEU][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.88[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4421767	0.91[EUR][1000 genomes]
rs4944120	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4945110	0.90[CEU][hapmap];0.80[CHB][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043912	chr11:76301316-76439095	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1039451	chr11:76301316-76440221	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	esv1850014	chr11:76384895-76464814	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76432600-76434400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:76433400-76456400	Weak transcription	Right Atrium	heart
3	chr11:76433600-76434200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:76433600-76440600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:76433800-76434200	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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