Variant report

Variant	rs10899355
Chromosome Location	chr11:76885079-76885080
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76877108..76882328-chr11:76882354..76886286,6	K562	blood:
2	chr11:76877684..76879888-chr11:76882658..76885632,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10899356	0.85[AFR][1000 genomes]
rs1109162	0.85[AFR][1000 genomes]
rs12805353	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12805873	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2076969	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4945155	0.85[AFR][1000 genomes]
rs948970	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76869400-76889200	Weak transcription	Pancreas	Pancrea
2	chr11:76880200-76887600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:76880400-76916600	Weak transcription	Right Atrium	heart
4	chr11:76881200-76885600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:76881200-76885800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:76881200-76888000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr11:76881600-76885200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:76882000-76885400	Genic enhancers	Fetal Intestine Small	intestine
9	chr11:76882000-76885800	Enhancers	Liver	Liver
10	chr11:76882200-76886000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:76882400-76886800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:76882400-76888000	Enhancers	Fetal Muscle Leg	muscle
13	chr11:76882600-76885400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:76882600-76886200	Enhancers	Adipose Nuclei	Adipose
15	chr11:76882800-76885200	Genic enhancers	Fetal Intestine Large	intestine
16	chr11:76882800-76885200	Enhancers	Fetal Stomach	stomach
17	chr11:76882800-76886000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr11:76882800-76887600	Enhancers	Spleen	Spleen
19	chr11:76883200-76885600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:76883200-76889200	Weak transcription	Gastric	stomach
21	chr11:76883400-76887800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr11:76883400-76889800	Weak transcription	Ovary	ovary
23	chr11:76883600-76885200	Enhancers	HUVEC	blood vessel
24	chr11:76883600-76885400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr11:76883600-76885400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:76883600-76886600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr11:76883800-76886000	Enhancers	Lung	lung
28	chr11:76883800-76887600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:76883800-76898400	Weak transcription	Colonic Mucosa	Colon
30	chr11:76884000-76886600	Enhancers	Fetal Muscle Trunk	muscle
31	chr11:76884000-76886800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:76884000-76888200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:76884200-76885200	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr11:76884200-76885200	Flanking Active TSS	HepG2	liver
35	chr11:76884200-76885800	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr11:76884200-76886200	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr11:76884200-76887000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:76884400-76885200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr11:76884400-76885400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr11:76884400-76886000	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr11:76884400-76886200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:76884600-76885200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr11:76884600-76885800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
44	chr11:76884600-76886400	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr11:76884800-76885600	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr11:76884800-76885800	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr11:76884800-76886400	Enhancers	Brain Hippocampus Middle	brain
48	chr11:76884800-76886800	Weak transcription	Right Ventricle	heart
49	chr11:76885000-76886000	Weak transcription	Primary hematopoietic stem cells	blood
50	chr11:76885000-76886200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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