Variant report

Variant	rs10899363
Chromosome Location	chr11:76928929-76928930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76919353..76921516-chr11:76926690..76929512,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10793242	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10793246	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs10899364	0.82[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs10899365	0.81[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10899369	1.00[YRI][hapmap]
rs10899376	1.00[YRI][hapmap]
rs11237124	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11237131	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11237137	0.85[EUR][1000 genomes]
rs11237145	0.81[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs11237146	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11237147	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs12274255	0.86[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs12287216	0.86[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs12287680	0.82[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs12294694	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12788116	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1613357	0.82[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs1618188	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs1620915	0.80[JPT][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs1621624	0.80[EUR][1000 genomes]
rs1670451	0.81[CEU][hapmap]
rs1670452	0.82[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs1670453	0.81[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs1670460	1.00[YRI][hapmap]
rs1793466	0.80[CEU][hapmap];1.00[YRI][hapmap]
rs1793488	1.00[YRI][hapmap]
rs1894214	0.81[CEU][hapmap]
rs1946005	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs2212991	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2226865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2298793	1.00[YRI][hapmap]
rs2602464	1.00[YRI][hapmap]
rs2725810	1.00[YRI][hapmap]
rs2725827	1.00[YRI][hapmap]
rs2844334	1.00[YRI][hapmap]
rs2852385	1.00[YRI][hapmap]
rs2853096	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs2853103	1.00[YRI][hapmap]
rs7104166	0.82[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs7104295	0.82[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs7121483	0.82[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs7483856	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7925558	0.83[EUR][1000 genomes]
rs7938075	0.82[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs9634031	0.90[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897936	chr11:76900813-76935002	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv534515	chr11:76900813-77035769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76922600-76930000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:76926000-76939800	Weak transcription	Pancreas	Pancrea
3	chr11:76926400-76934400	Weak transcription	Gastric	stomach
4	chr11:76926600-76937000	Weak transcription	Adipose Nuclei	Adipose
5	chr11:76926600-76937000	Weak transcription	Placenta	Placenta
6	chr11:76927400-76935600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:76927400-76936400	Weak transcription	Ovary	ovary
8	chr11:76927800-76934400	Weak transcription	Fetal Intestine Large	intestine
9	chr11:76928200-76934800	Weak transcription	Liver	Liver
10	chr11:76928200-76937200	Weak transcription	Spleen	Spleen
11	chr11:76928600-76934400	Weak transcription	Fetal Intestine Small	intestine

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