Variant report

Variant	rs10904143
Chromosome Location	chr10:3988923-3988924
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:3987220..3989447-chr10:3991646..3993576,2	K562	blood:
2	chr10:3827002..3831409-chr10:3988351..3992679,7	K562	blood:
3	chr10:3988530..3991271-chr10:4000860..4003144,2	MCF-7	breast:
4	chr10:3827664..3829812-chr10:3985989..3988957,3	K562	blood:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2031574	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4630187	0.83[AMR][1000 genomes]
rs4881251	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv24718	chr10:3987604-3991658	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:3979000-3994400	Weak transcription	Stomach Mucosa	stomach
2	chr10:3981800-4001800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:3984200-3990000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr10:3985000-3990800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:3985000-3994200	Weak transcription	Gastric	stomach
6	chr10:3985600-3991000	Weak transcription	HUVEC	blood vessel
7	chr10:3985600-3991400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:3985800-3992800	Enhancers	Dnd41	blood
9	chr10:3986000-3997600	Weak transcription	Right Atrium	heart
10	chr10:3986200-3990600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr10:3986200-3992000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:3986600-3991000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:3986800-3989200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:3987200-3989400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr10:3987200-3993800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:3987400-3989000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr10:3987800-3989000	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr10:3987800-3989400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr10:3987800-3993600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr10:3987800-3993800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr10:3987800-3993800	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr10:3988000-3989000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:3988000-3989000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:3988000-3990000	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr10:3988000-3992800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr10:3988000-3993800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:3988600-3989000	Weak transcription	Left Ventricle	heart
28	chr10:3988600-3990000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr10:3988600-3990800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr10:3988600-3991000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:3988600-3991200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:3988600-3991400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:3988600-3991800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:3988800-3989800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:3988800-3989800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:3988800-3989800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr10:3988800-3990000	Enhancers	NHEK	skin
38	chr10:3988800-3990400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:3988800-3990800	Weak transcription	Fetal Thymus	thymus
40	chr10:3988800-3991000	Weak transcription	Primary T cells from cord blood	blood
41	chr10:3988800-3991000	Weak transcription	Fetal Muscle Leg	muscle
42	chr10:3988800-3991200	Weak transcription	HMEC	breast
43	chr10:3988800-3991200	Weak transcription	NH-A	brain
44	chr10:3988800-3991400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:3988800-3992000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:3988800-3993400	Enhancers	Primary T cells fromperipheralblood	blood
47	chr10:3988800-3997400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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