Variant report

Variant	rs10904271
Chromosome Location	chr10:4542475-4542476
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11252568	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252571	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1904667	0.84[ASN][1000 genomes]
rs7907488	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1041785	chr10:4507158-4564194	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv522046	chr10:4538492-4570425	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4540600-4551400	Weak transcription	Aorta	Aorta
2	chr10:4540800-4543200	Weak transcription	Gastric	stomach
3	chr10:4540800-4546800	Weak transcription	Left Ventricle	heart
4	chr10:4541400-4542800	Weak transcription	HUVEC	blood vessel
5	chr10:4541600-4554800	Weak transcription	NHLF	lung
6	chr10:4541800-4543000	Weak transcription	Fetal Intestine Small	intestine
7	chr10:4541800-4548200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:4541800-4548400	Weak transcription	Osteobl	bone
9	chr10:4542200-4543200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:4542200-4543200	Weak transcription	Spleen	Spleen
11	chr10:4542200-4544200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:4542200-4546800	Weak transcription	Right Ventricle	heart
13	chr10:4542200-4548200	Weak transcription	NHDF-Ad	bronchial
14	chr10:4542200-4553200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:4542400-4546800	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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