Variant report

Variant	rs10904531
Chromosome Location	chr10:5635856-5635857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5634973..5639659-chr10:5649443..5654538,7	MCF-7	breast:
2	chr10:5592839..5594625-chr10:5635555..5637681,2	MCF-7	breast:
3	chr10:5488551..5493324-chr10:5634966..5640778,7	K562	blood:
4	chr10:5614636..5617261-chr10:5635762..5637348,3	K562	blood:
5	chr10:5629660..5633537-chr10:5634085..5636643,3	K562	blood:
6	chr10:5624590..5636573-chr10:5652742..5661113,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228951	Chromatin interaction
ENSG00000173848	Chromatin interaction
ENSG00000231483	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11255051	0.85[ASN][1000 genomes]
rs11255916	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11259544	0.81[AMR][1000 genomes]
rs11259582	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11259742	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1544216	0.85[ASN][1000 genomes]
rs2380196	0.99[ASN][1000 genomes]
rs2380197	0.99[ASN][1000 genomes]
rs4747358	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57893347	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61832660	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61832676	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6601981	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72781996	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7896078	0.85[ASN][1000 genomes]
rs7924096	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv932104	chr10:5203626-5641023	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1054865	chr10:5225305-5638119	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv831774	chr10:5463556-5657421	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv894798	chr10:5503610-5670275	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv523491	chr10:5542109-5720067	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
7	esv2757364	chr10:5557024-5720512	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
8	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5626200-5636200	Weak transcription	Primary B cells from cord blood	blood
2	chr10:5627400-5639400	Enhancers	Fetal Muscle Leg	muscle
3	chr10:5628600-5636200	Weak transcription	Fetal Kidney	kidney
4	chr10:5630000-5636200	Weak transcription	Fetal Lung	lung
5	chr10:5630800-5636400	Weak transcription	Left Ventricle	heart
6	chr10:5631200-5636200	Weak transcription	Lung	lung
7	chr10:5632000-5636400	Weak transcription	Esophagus	oesophagus
8	chr10:5632200-5636000	Weak transcription	NHDF-Ad	bronchial
9	chr10:5632200-5636800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:5632400-5636000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:5632400-5636200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:5632400-5636200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:5632400-5636200	Weak transcription	HUVEC	blood vessel
14	chr10:5632400-5636400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:5632400-5636400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:5632400-5636400	Weak transcription	NH-A	brain
17	chr10:5632400-5636600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:5632400-5636600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:5632400-5636600	Weak transcription	NHEK	skin
20	chr10:5632400-5637000	Weak transcription	K562	blood
21	chr10:5632600-5636200	Weak transcription	Osteobl	bone
22	chr10:5632600-5636400	Weak transcription	HSMM	muscle
23	chr10:5632800-5636400	Weak transcription	A549	lung
24	chr10:5633000-5636000	Weak transcription	Fetal Stomach	stomach
25	chr10:5633200-5636200	Weak transcription	Hela-S3	cervix
26	chr10:5633200-5636400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:5633400-5636200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr10:5633400-5636400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:5633600-5636000	Weak transcription	Fetal Thymus	thymus
30	chr10:5633800-5636200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:5633800-5636200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:5633800-5636200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:5633800-5636200	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr10:5633800-5636400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr10:5633800-5636600	Weak transcription	Fetal Intestine Large	intestine
36	chr10:5633800-5637000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr10:5633800-5641600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:5634200-5636200	Weak transcription	Fetal Heart	heart
39	chr10:5634200-5638200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr10:5634400-5636000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:5634400-5636600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr10:5634400-5636600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:5634400-5636600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:5634800-5636600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:5634800-5637400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:5634800-5651200	Weak transcription	Pancreas	Pancrea
47	chr10:5635600-5637600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr10:5635800-5636200	Weak transcription	HMEC	breast
49	chr10:5635800-5636600	Enhancers	Placenta	Placenta

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