Variant report

Variant	rs10904717
Chromosome Location	chr10:16367472-16367473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10752050	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10795375	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10795377	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10795378	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10795380	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10795381	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10795382	0.86[EUR][1000 genomes]
rs11253917	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1334587	0.86[ASN][1000 genomes]
rs1475758	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1475759	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2087433	0.86[ASN][1000 genomes]
rs2101509	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2130224	0.89[ASN][1000 genomes]
rs2130225	0.89[ASN][1000 genomes]
rs2210706	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2225701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2225702	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28464625	0.91[ASN][1000 genomes]
rs4628588	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4747270	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4747271	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4748276	0.89[ASN][1000 genomes]
rs4748277	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4748279	0.87[EUR][1000 genomes]
rs6602095	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6602097	0.81[ASN][1000 genomes]
rs7070292	0.81[ASN][1000 genomes]
rs7071589	0.89[ASN][1000 genomes]
rs7081826	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7081982	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7081998	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7082014	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7082295	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7088589	0.91[EUR][1000 genomes]
rs7898297	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902573	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs969134	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530146	chr10:15722937-16522747	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv870420	chr10:16225427-16541252	Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv894904	chr10:16233175-16477106	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831796	chr10:16240111-16393044	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1051284	chr10:16321532-16392126	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:16362400-16369800	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links