Variant report

Variant	rs10906468
Chromosome Location	chr10:6453580-6453581
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10906464	1.00[CHB][hapmap]
rs10906490	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11258536	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11258563	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11258608	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11258610	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs604856	0.83[AMR][1000 genomes]
rs616490	0.91[EUR][1000 genomes]
rs7091849	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72781706	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1053177	chr10:6453307-6473114	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6450600-6454000	Enhancers	Fetal Lung	lung
2	chr10:6451400-6453600	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr10:6451600-6453800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr10:6451800-6453800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:6451800-6453800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:6451800-6453800	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr10:6452200-6468200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr10:6452400-6453600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:6452400-6453600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr10:6452400-6454000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:6452400-6454200	Enhancers	Thymus	Thymus
12	chr10:6452600-6453600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:6452600-6454000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:6452600-6454800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:6452600-6478600	Weak transcription	Brain Anterior Caudate	brain
16	chr10:6452600-6481400	Weak transcription	Brain Substantia Nigra	brain
17	chr10:6452800-6457200	Weak transcription	Right Ventricle	heart
18	chr10:6452800-6464400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:6452800-6464600	Weak transcription	Primary T cells from cord blood	blood
20	chr10:6453000-6465600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:6453200-6465000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr10:6453200-6469200	Weak transcription	Dnd41	blood
23	chr10:6453200-6470800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr10:6453400-6453600	Bivalent Enhancer	HUVEC	blood vessel
25	chr10:6453400-6464200	Weak transcription	Fetal Thymus	thymus
26	chr10:6453400-6467800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:6453400-6469000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links