Variant report

Variant	rs10907383
Chromosome Location	chr1:223656288-223656289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10907386	0.95[ASN][1000 genomes]
rs11261291	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11261296	0.86[ASN][1000 genomes]
rs11586368	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12041055	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4072756	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4233523	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4489550	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4511103	0.84[ASN][1000 genomes]
rs4512641	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4661276	0.84[ASN][1000 genomes]
rs6604719	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6683246	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1013538	chr1:223626487-223670776	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10907383	STAB2	trans	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223653200-223660800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:223654200-223661000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:223655600-223656400	Enhancers	GM12878-XiMat	blood
4	chr1:223655800-223656800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:223655800-223657200	Enhancers	Placenta	Placenta
6	chr1:223656000-223656600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr1:223656000-223656600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr1:223656000-223656600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr1:223656000-223657000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:223656200-223656400	Bivalent Enhancer	Hela-S3	cervix
11	chr1:223656200-223656800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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