Variant report

Variant	rs10908438
Chromosome Location	chr1:154750638-154750639
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:154750548..154753894-chr1:154799055..154801414,3	K562	blood:
2	chr1:154750627..154752191-chr1:154767353..154769437,2	MCF-7	breast:
3	chr1:154744584..154747460-chr1:154748764..154751620,2	K562	blood:
4	chr1:154749107..154752078-chr1:154759443..154761879,2	K562	blood:
5	chr1:154750500..154754364-chr1:154754876..154758244,3	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10752608	0.83[ASN][1000 genomes]
rs10908439	0.90[ASN][1000 genomes]
rs10908441	0.85[ASN][1000 genomes]
rs11584403	0.91[CEU][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11808053	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12404994	0.80[ASN][1000 genomes]
rs6426929	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6666341	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7532286	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7547552	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
3	nsv427797	chr1:154559115-154933717	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv470740	chr1:154568683-154796895	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv464050	chr1:154568683-154801247	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv547958	chr1:154568683-154801247	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154740800-154764000	Weak transcription	Right Ventricle	heart
2	chr1:154742200-154751400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:154745000-154758200	Weak transcription	Colonic Mucosa	Colon
4	chr1:154746200-154759600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:154746600-154757400	Weak transcription	Colon Smooth Muscle	Colon
6	chr1:154746600-154763800	Weak transcription	Brain Angular Gyrus	brain
7	chr1:154747400-154757400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:154747800-154751400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:154747800-154757000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr1:154748000-154751800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr1:154748600-154752000	Weak transcription	Brain Hippocampus Middle	brain
12	chr1:154748800-154760600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr1:154748800-154764000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:154749200-154752200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:154749200-154753400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr1:154749200-154757400	Weak transcription	Brain Anterior Caudate	brain
17	chr1:154749200-154759600	Weak transcription	Fetal Brain Female	brain
18	chr1:154749400-154751400	Weak transcription	Fetal Muscle Leg	muscle
19	chr1:154749400-154752000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:154750000-154751000	Enhancers	GM12878-XiMat	blood
21	chr1:154750000-154763800	Weak transcription	HSMMtube	muscle
22	chr1:154750200-154752000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:154750400-154751200	Weak transcription	Fetal Stomach	stomach
24	chr1:154750400-154757000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:154750600-154751800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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