Variant report

Variant	rs10908650
Chromosome Location	chr1:158442501-158442502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1002599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10489833	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs10489834	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs10489835	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs10797020	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs10908656	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs10908680	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs11264976	0.81[ASN][1000 genomes]
rs11264989	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs11264998	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs11265002	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs11265003	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1157525	0.80[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap]
rs12041218	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs12079889	0.87[ASN][1000 genomes]
rs12080815	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs12081915	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs12125929	0.89[ASN][1000 genomes]
rs12128525	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12136056	0.83[ASN][1000 genomes]
rs12403393	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12404821	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12407049	0.97[ASN][1000 genomes]
rs1342947	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1342958	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1418846	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1418847	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1573519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1873509	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1873510	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1873511	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1894040	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs2157687	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs2317969	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs34147968	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35051889	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4609418	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs4657080	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57366633	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58380553	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6697656	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs71517522	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7512592	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs7518808	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs7549581	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs863345	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs863347	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs863351	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs863352	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs863365	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs950260	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs950487	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs952222	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs952223	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs952224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv998569	chr1:158317392-158443389	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158431800-158443200	Weak transcription	Fetal Thymus	thymus
2	chr1:158436000-158449600	Weak transcription	Thymus	Thymus

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