Variant report

Variant	rs10910
Chromosome Location	chr15:74472199-74472200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:59)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:59 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TFAP2C	chr15:74471553-74472823	Hela-S3	cervix:	n/a	n/a
2	TCF12	chr15:74471543-74472367	SK-N-SH	brain:	n/a	n/a
3	NFIC	chr15:74471553-74472609	ECC-1	luminal epithelium:	n/a	n/a
4	GATA3	chr15:74471524-74472380	SK-N-SH	brain:	n/a	n/a
5	SMC3	chr15:74471596-74472278	Hela-S3	cervix:	n/a	n/a
6	MYC	chr15:74471652-74472621	MCF10A-Er-Src	breast:	n/a	n/a
7	RCOR1	chr15:74471644-74472235	Hela-S3	cervix:	n/a	n/a
8	TBP	chr15:74471697-74472287	Hela-S3	cervix:	n/a	n/a
9	RXRA	chr15:74471616-74472691	SK-N-SH	brain:	n/a	n/a
10	TCF7L2	chr15:74471667-74472244	Hela-S3	cervix:	n/a	n/a
11	MAX	chr15:74471537-74472291	SK-N-SH	brain:	n/a	n/a
12	GATA3	chr15:74471562-74472298	A549	lung:	n/a	n/a
13	MXI1	chr15:74471790-74472224	Hela-S3	cervix:	n/a	n/a
14	PBX3	chr15:74471667-74472333	SK-N-SH	brain:	n/a	n/a
15	FOSL2	chr15:74471487-74472853	A549	lung:	n/a	chr15:74472604-74472614 chr15:74472604-74472614
16	ZBTB7A	chr15:74471321-74472346	ECC-1	luminal epithelium:	n/a	chr15:74471484-74471491
17	EP300	chr15:74471606-74472371	ECC-1	luminal epithelium:	n/a	n/a
18	MAX	chr15:74471682-74472409	ECC-1	luminal epithelium:	n/a	n/a
19	TCF12	chr15:74471555-74472474	ECC-1	luminal epithelium:	n/a	n/a
20	EP300	chr15:74471685-74472299	A549	lung:	n/a	n/a
21	FOSL2	chr15:74471697-74472223	SK-N-SH	brain:	n/a	n/a
22	EP300	chr15:74471684-74472205	Hela-S3	cervix:	n/a	n/a
23	JUND	chr15:74469814-74473399	SK-N-SH	brain:	n/a	chr15:74472604-74472614 chr15:74472604-74472614 chr15:74470403-74470410
24	RAD21	chr15:74471713-74472234	Hela-S3	cervix:	n/a	n/a
25	RAD21	chr15:74471738-74472226	SK-N-SH_RA	brain:	n/a	n/a
26	EP300	chr15:74471722-74472288	SK-N-SH_RA	brain:	n/a	n/a
27	TCF12	chr15:74471542-74472827	A549	lung:	n/a	chr15:74472614-74472623
28	TEAD4	chr15:74471707-74472262	ECC-1	luminal epithelium:	n/a	n/a
29	SMARCC1	chr15:74471538-74472549	Hela-S3	cervix:	n/a	n/a
30	NFIC	chr15:74471656-74472413	SK-N-SH	brain:	n/a	n/a
31	TCF12	chr15:74471570-74472526	ECC-1	luminal epithelium:	n/a	n/a
32	POLR2A	chr15:74471881-74472460	Gliobla	brain:	n/a	n/a
33	MAX	chr15:74471664-74472567	SK-N-SH	brain:	n/a	n/a
34	MAZ	chr15:74471518-74472308	IMR90	lung:	n/a	n/a
35	RAD21	chr15:74471654-74472486	ECC-1	luminal epithelium:	n/a	n/a
36	MAX	chr15:74471611-74472235	Hela-S3	cervix:	n/a	n/a
37	PBX3	chr15:74471548-74472345	SK-N-SH	brain:	n/a	n/a
38	MAX	chr15:74471656-74472285	A549	lung:	n/a	n/a
39	RFX5	chr15:74471672-74472250	Hela-S3	cervix:	n/a	n/a
40	FOSL2	chr15:74471590-74472344	SK-N-SH	brain:	n/a	n/a
41	EP300	chr15:74471512-74472511	SK-N-SH	brain:	n/a	n/a
42	MAX	chr15:74471757-74472364	ECC-1	luminal epithelium:	n/a	n/a
43	RCOR1	chr15:74471334-74473039	IMR90	lung:	n/a	n/a
44	POLR2A	chr15:74471592-74472292	SK-N-SH	brain:	n/a	n/a
45	GTF2F1	chr15:74471675-74472383	Hela-S3	cervix:	n/a	n/a
46	MAX	chr15:74471536-74472972	A549	lung:	n/a	n/a
47	SP1	chr15:74471586-74472218	A549	lung:	n/a	n/a
48	NFIC	chr15:74471540-74473134	SK-N-SH	brain:	n/a	n/a
49	MAZ	chr15:74471557-74472245	Hela-S3	cervix:	n/a	n/a
50	YY1	chr15:74471701-74472201	SK-N-SH_RA	brain:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74471188..74474733-chr15:74480852..74485546,5	MCF-7	breast:
2	chr15:74466900..74472644-chr15:74474380..74478364,5	K562	blood:
3	chr15:74466286..74468382-chr15:74470933..74472488,2	MCF-7	breast:
4	chr15:74465289..74467713-chr15:74468699..74473006,4	MCF-7	breast:
5	chr15:74471878..74474660-chr15:74491803..74495339,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000261543	TF binding region
ENSG00000259264	Chromatin interaction
ENSG00000137868	Chromatin interaction
ENSG00000129009	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1052622	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1385650	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs351243	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4886574	0.93[GIH][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4887066	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs6495089	0.87[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1050884	chr15:74394983-74489413	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv904345	chr15:74458181-74526596	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74464800-74473600	Enhancers	Right Ventricle	heart
2	chr15:74465200-74472200	Weak transcription	Brain Substantia Nigra	brain
3	chr15:74465200-74473000	Enhancers	Brain Germinal Matrix	brain
4	chr15:74466200-74492800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:74466600-74473200	Enhancers	HSMMtube	muscle
6	chr15:74466600-74480600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr15:74467200-74473600	Enhancers	Right Atrium	heart
8	chr15:74467400-74472200	Weak transcription	Pancreas	Pancrea
9	chr15:74467400-74473400	Genic enhancers	Fetal Stomach	stomach
10	chr15:74467400-74473800	Enhancers	NHDF-Ad	bronchial
11	chr15:74467600-74473200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:74467800-74472400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:74467800-74473600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr15:74468000-74472200	Weak transcription	Gastric	stomach
15	chr15:74468400-74473400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr15:74468400-74473600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr15:74468600-74473200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:74468600-74473600	Enhancers	NH-A	brain
19	chr15:74469000-74472200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:74469000-74472800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:74469000-74473200	Enhancers	NHLF	lung
22	chr15:74469200-74472200	Weak transcription	Colon Smooth Muscle	Colon
23	chr15:74469200-74473200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:74469200-74474000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr15:74469200-74491800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr15:74469400-74487600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr15:74469400-74493200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr15:74469600-74472200	Enhancers	Osteobl	bone
29	chr15:74469800-74472200	Weak transcription	Fetal Intestine Small	intestine
30	chr15:74470000-74472600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr15:74470000-74472600	Enhancers	Brain Angular Gyrus	brain
32	chr15:74470000-74473000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:74470000-74473400	Enhancers	HUVEC	blood vessel
34	chr15:74470000-74473800	Enhancers	Left Ventricle	heart
35	chr15:74470600-74473600	Enhancers	Ovary	ovary
36	chr15:74470600-74474000	Enhancers	Lung	lung
37	chr15:74470600-74475600	Weak transcription	Fetal Kidney	kidney
38	chr15:74470600-74484000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:74470800-74492800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr15:74471000-74473600	Enhancers	Fetal Muscle Leg	muscle
41	chr15:74471200-74472400	Flanking Active TSS	Hela-S3	cervix
42	chr15:74471200-74472800	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr15:74471200-74473600	Enhancers	Fetal Thymus	thymus
44	chr15:74471200-74473600	Enhancers	HMEC	breast
45	chr15:74471200-74473800	Enhancers	Spleen	Spleen
46	chr15:74471400-74472400	Enhancers	Fetal Muscle Trunk	muscle
47	chr15:74471400-74472400	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr15:74471400-74472800	Enhancers	Rectal Smooth Muscle	rectum
49	chr15:74471400-74473200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr15:74471400-74473200	Enhancers	Fetal Lung	lung

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