Variant report

Variant	rs1091032
Chromosome Location	chr6:24539501-24539502
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KIAA0319-1	chr6:24539164-24539510	NONHSAT108115

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1054899	0.82[ASN][1000 genomes]
rs1091031	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1091033	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2744598	0.82[ASN][1000 genomes]
rs2744599	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2744600	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1091032	ALDH5A1	cis	lung	GTEx

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24496200-24583000	Weak transcription	Hela-S3	cervix
2	chr6:24509400-24545800	Weak transcription	Small Intestine	intestine
3	chr6:24528400-24540800	Strong transcription	Liver	Liver
4	chr6:24530000-24540800	Strong transcription	Thymus	Thymus
5	chr6:24530200-24540800	Strong transcription	Fetal Thymus	thymus
6	chr6:24532200-24545000	Weak transcription	K562	blood
7	chr6:24534800-24540000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:24534800-24542400	Weak transcription	Fetal Kidney	kidney
9	chr6:24535000-24542200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:24535000-24546200	Weak transcription	Pancreas	Pancrea
11	chr6:24535000-24547400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:24535200-24566600	Weak transcription	Brain Germinal Matrix	brain
13	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
14	chr6:24535400-24539800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:24535400-24550000	Weak transcription	Gastric	stomach
16	chr6:24535600-24540400	Weak transcription	Fetal Intestine Large	intestine
17	chr6:24535600-24540400	Weak transcription	Lung	lung
18	chr6:24535600-24542400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:24535600-24542400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:24535600-24543400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:24535600-24544000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr6:24535600-24546000	Weak transcription	Fetal Muscle Leg	muscle
23	chr6:24535600-24546800	Weak transcription	Dnd41	blood
24	chr6:24535600-24547400	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:24535600-24560600	Weak transcription	Brain Anterior Caudate	brain
26	chr6:24535600-24560600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:24535600-24563200	Weak transcription	Brain Angular Gyrus	brain
28	chr6:24535600-24583400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr6:24535800-24541600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:24536000-24539600	Weak transcription	Fetal Stomach	stomach
31	chr6:24536000-24543800	Weak transcription	Primary T cells from cord blood	blood
32	chr6:24537000-24545400	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr6:24537000-24546200	Weak transcription	Fetal Heart	heart
34	chr6:24537600-24542200	Weak transcription	Adipose Nuclei	Adipose
35	chr6:24538200-24539600	Weak transcription	Primary B cells from cord blood	blood
36	chr6:24538200-24539800	Weak transcription	Right Ventricle	heart
37	chr6:24538200-24542000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:24538200-24544200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:24538200-24544600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr6:24538200-24545800	Weak transcription	Aorta	Aorta
41	chr6:24538200-24546000	Weak transcription	HepG2	liver
42	chr6:24538200-24547400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr6:24538400-24547400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr6:24539200-24539600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr6:24539200-24583200	Weak transcription	Fetal Intestine Small	intestine
46	chr6:24539400-24539600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:24539400-24540200	Strong transcription	Fetal Brain Female	brain
48	chr6:24539400-24540400	Strong transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links