Variant report

Variant	rs10910891
Chromosome Location	chr1:171972116-171972117
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:171971640..171972474-chr1:172368418..172369271,3	MCF-7	breast:
2	chr1:171953752..171954506-chr1:171971500..171972129,2	K562	blood:
3	chr1:171971579..171972543-chr1:172412877..172413804,4	MCF-7	breast:
4	chr1:171971059..171972610-chr1:172397995..172399146,5	MCF-7	breast:
5	chr1:171972033..171974516-chr1:172324931..172327450,2	MCF-7	breast:
6	chr1:171968377..171970997-chr1:171971056..171973797,3	K562	blood:
7	chr1:171971958..171972542-chr1:172370745..172371601,3	MCF-7	breast:
8	chr1:171971691..171972193-chr1:172010147..172011060,2	MCF-7	breast:
9	chr1:171968377..171970997-chr1:171971056..171973527,2	K562	blood:
10	chr1:171971821..171972449-chr1:172059078..172060039,2	MCF-7	breast:
11	chr1:171971636..171972488-chr1:172398541..172399133,3	MCF-7	breast:
12	chr1:171972038..171972984-chr1:172367663..172368613,2	MCF-7	breast:
13	chr1:171971687..171972514-chr1:172368404..172369272,3	K562	blood:
14	chr1:171971874..171974567-chr1:172398911..172400668,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1073940	0.81[AMR][1000 genomes]
rs10910863	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10910881	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12073819	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12077603	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12408359	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16843679	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16843681	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2208371	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3736790	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55682753	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6662250	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6668677	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6672365	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6680084	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6702539	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7525638	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7546327	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv831893	chr1:171802450-171985000	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv532342	chr1:171922237-172133785	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171949000-171976000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:171968600-171975000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr1:171969000-171972800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:171969000-171973000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:171969000-171973400	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:171969200-171972800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:171969200-171973000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:171969200-171973200	Weak transcription	Brain Angular Gyrus	brain
9	chr1:171969200-171973400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:171969400-171973000	Weak transcription	HMEC	breast
11	chr1:171969400-171973600	Weak transcription	NHDF-Ad	bronchial
12	chr1:171969400-171974600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:171969600-171973000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:171969600-171973000	Weak transcription	NHEK	skin
15	chr1:171969600-171973400	Weak transcription	HSMM	muscle
16	chr1:171969600-171974600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:171970800-171973200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:171971800-171972200	Weak transcription	Brain Substantia Nigra	brain
19	chr1:171971800-171972600	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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