Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172217494..172219854-chr1:172223387..172225787,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11808940	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12069167	0.92[ASN][1000 genomes]
rs2586389	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2586392	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2586394	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2586401	0.92[ASN][1000 genomes]
rs2586403	0.92[ASN][1000 genomes]
rs2586404	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2586407	0.92[ASN][1000 genomes]
rs2586408	0.92[ASN][1000 genomes]
rs2586410	0.92[ASN][1000 genomes]
rs2586411	0.92[ASN][1000 genomes]
rs2586412	0.91[ASN][1000 genomes]
rs2586413	0.91[ASN][1000 genomes]
rs2757493	0.92[ASN][1000 genomes]
rs2757495	0.91[ASN][1000 genomes]
rs2757496	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs477289	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs479336	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6701929	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7550558	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000079	chr1:172146935-172230545	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv465650	chr1:172175115-172247127	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv548192	chr1:172175115-172247127	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv872546	chr1:172186321-172219995	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172208800-172227600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr1:172209400-172218400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr1:172209400-172220800	Weak transcription	Right Ventricle	heart
4	chr1:172209800-172230800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:172211400-172220600	Weak transcription	Fetal Stomach	stomach
6	chr1:172215000-172219000	Weak transcription	Pancreas	Pancrea
7	chr1:172216400-172229200	Weak transcription	Brain Substantia Nigra	brain
8	chr1:172216600-172223600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:172216800-172223200	Weak transcription	Muscle Satellite Cultured Cells	--

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