Variant report

Variant	rs10911557
Chromosome Location	chr1:184283506-184283507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr1:184283501-184283602	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr1:184283402-184283633	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000207080	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1024298	0.83[EUR][1000 genomes]
rs1024299	0.83[EUR][1000 genomes]
rs1024300	0.83[EUR][1000 genomes]
rs10911556	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911560	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12059311	0.93[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12069709	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12074351	1.00[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12079075	0.84[EUR][1000 genomes]
rs12079081	0.87[EUR][1000 genomes]
rs12096575	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117439	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128914	0.84[EUR][1000 genomes]
rs12403673	0.85[EUR][1000 genomes]
rs12727053	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12727591	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12728309	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1318406	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1930291	0.83[EUR][1000 genomes]
rs1930293	0.93[CEU][hapmap]
rs2161986	0.83[EUR][1000 genomes]
rs34110117	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34782871	0.95[EUR][1000 genomes]
rs36020636	0.81[EUR][1000 genomes]
rs4263963	0.85[EUR][1000 genomes]
rs4618934	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4622032	0.85[EUR][1000 genomes]
rs4651196	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs57757593	0.83[EUR][1000 genomes]
rs6424946	0.85[EUR][1000 genomes]
rs66536948	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73059572	0.84[EUR][1000 genomes]
rs7516012	0.84[EUR][1000 genomes]
rs7529843	0.83[EUR][1000 genomes]
rs9645302	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs984419	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184282400-184285000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:184282800-184285600	Enhancers	NHDF-Ad	bronchial
3	chr1:184283200-184284200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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