Variant report

Variant	rs10911937
Chromosome Location	chr1:186835137-186835138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10489407	0.90[JPT][hapmap]
rs10737270	0.89[JPT][hapmap]
rs10752977	0.89[JPT][hapmap]
rs10752979	0.90[JPT][hapmap]
rs10911930	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10911931	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10911932	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10911933	0.90[JPT][hapmap]
rs10911934	0.94[JPT][hapmap]
rs4651330	0.95[JPT][hapmap]
rs4651331	0.95[JPT][hapmap]
rs6425053	0.90[JPT][hapmap]
rs6685652	0.95[JPT][hapmap];0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762854	chr1:186547101-186847574	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186815200-186844800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:186817800-186839000	Weak transcription	Hela-S3	cervix
3	chr1:186825400-186843600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr1:186828400-186835200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:186829600-186839000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr1:186830000-186838400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:186830600-186838600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr1:186832200-186837400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr1:186832800-186839000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:186833200-186835600	Enhancers	NHDF-Ad	bronchial
11	chr1:186833200-186835800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:186834200-186835400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:186834400-186835600	Enhancers	NHEK	skin
14	chr1:186834600-186835400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:186834600-186835400	Enhancers	Colon Smooth Muscle	Colon
16	chr1:186834600-186835400	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr1:186834800-186835200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:186834800-186836800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:186835000-186835400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr1:186835000-186835400	Enhancers	Osteobl	bone

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