Variant report

Variant	rs10912911
Chromosome Location	chr1:171374089-171374090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10798394	0.86[EUR][1000 genomes]
rs10798395	0.86[EUR][1000 genomes]
rs11579231	0.85[EUR][1000 genomes]
rs12072674	0.86[EUR][1000 genomes]
rs12121150	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12402699	0.85[EUR][1000 genomes]
rs12402708	0.86[EUR][1000 genomes]
rs2207189	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6689514	0.84[EUR][1000 genomes]
rs72637248	0.98[ASN][1000 genomes]
rs72637249	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001228	chr1:170885787-171452579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv10193	chr1:171128845-171414611	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1002423	chr1:171294384-171376936	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171372200-171374400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr1:171372200-171374400	Enhancers	Placenta	Placenta
3	chr1:171372600-171374200	Enhancers	Aorta	Aorta
4	chr1:171372600-171374400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:171373000-171374200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:171373400-171374200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr1:171373600-171374200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:171374000-171374200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
9	chr1:171374000-171374200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:171374000-171374400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr1:171374000-171374400	Active TSS	Duodenum Mucosa	Duodenum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links