Variant report

Variant	rs10913719
Chromosome Location	chr1:179289099-179289100
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179282486..179284547-chr1:179286630..179289373,2	K562	blood:
2	chr1:179288088..179290753-chr1:179291190..179293971,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12067365	1.00[AMR][1000 genomes]
rs12078952	1.00[AFR][1000 genomes]
rs12090046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28626318	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179263800-179304600	Weak transcription	Lung	lung
2	chr1:179263800-179306400	Weak transcription	Gastric	stomach
3	chr1:179264200-179290200	Weak transcription	Aorta	Aorta
4	chr1:179264600-179292000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr1:179264600-179304600	Weak transcription	Right Ventricle	heart
6	chr1:179264600-179310200	Weak transcription	Brain Substantia Nigra	brain
7	chr1:179264600-179314000	Weak transcription	Brain Angular Gyrus	brain
8	chr1:179264600-179314000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:179264800-179313800	Weak transcription	Brain Hippocampus Middle	brain
10	chr1:179264800-179313800	Weak transcription	Fetal Brain Female	brain
11	chr1:179264800-179334200	Weak transcription	Colon Smooth Muscle	Colon
12	chr1:179266400-179322800	Weak transcription	Small Intestine	intestine
13	chr1:179268400-179312000	Weak transcription	Fetal Thymus	thymus
14	chr1:179272600-179313800	Weak transcription	Brain Anterior Caudate	brain
15	chr1:179273000-179311600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr1:179273200-179290400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr1:179273200-179294600	Weak transcription	Placenta	Placenta
18	chr1:179273800-179293400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr1:179274400-179289400	Weak transcription	Fetal Lung	lung
20	chr1:179274600-179302400	Weak transcription	Left Ventricle	heart
21	chr1:179274600-179304400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr1:179274600-179306000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr1:179275600-179311600	Weak transcription	HUVEC	blood vessel
24	chr1:179276400-179306200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr1:179276600-179304800	Weak transcription	Pancreas	Pancrea
26	chr1:179276800-179290200	Weak transcription	Fetal Intestine Large	intestine
27	chr1:179276800-179295200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr1:179277000-179290400	Weak transcription	Dnd41	blood
29	chr1:179277000-179291600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr1:179277600-179296400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr1:179280400-179292000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr1:179280400-179296200	Weak transcription	NH-A	brain
33	chr1:179280400-179314000	Weak transcription	NHLF	lung
34	chr1:179280600-179292400	Weak transcription	HMEC	breast
35	chr1:179280600-179292800	Weak transcription	NHDF-Ad	bronchial
36	chr1:179280600-179293400	Weak transcription	Osteobl	bone
37	chr1:179280600-179299000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr1:179281200-179300200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr1:179282000-179291400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr1:179282000-179313000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr1:179282200-179295200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr1:179282400-179290000	Weak transcription	Fetal Muscle Leg	muscle
43	chr1:179282400-179290200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr1:179282400-179290400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr1:179282400-179290600	Weak transcription	A549	lung
46	chr1:179282400-179290800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr1:179282400-179291600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr1:179282400-179291800	Weak transcription	Adipose Nuclei	Adipose
49	chr1:179282400-179292000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr1:179282400-179292800	Weak transcription	Primary B cells from peripheral blood	blood

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