Variant report

Variant	rs10914097
Chromosome Location	chr1:180742528-180742529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:180739733..180743864-chr1:180743918..180747985,4	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10914092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914099	1.00[AMR][1000 genomes]
rs10914100	1.00[AMR][1000 genomes]
rs12058670	1.00[AMR][1000 genomes]
rs12059839	1.00[AMR][1000 genomes]
rs12060280	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12062543	1.00[AMR][1000 genomes]
rs12062549	1.00[AMR][1000 genomes]
rs12064761	1.00[AMR][1000 genomes]
rs12068825	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070554	1.00[AMR][1000 genomes]
rs12073278	1.00[AMR][1000 genomes]
rs12076029	1.00[AMR][1000 genomes]
rs12076333	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12076671	1.00[AMR][1000 genomes]
rs12082348	1.00[AMR][1000 genomes]
rs12083109	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12084562	1.00[AMR][1000 genomes]
rs12085100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12087750	1.00[AMR][1000 genomes]
rs12088793	1.00[AMR][1000 genomes]
rs12089474	1.00[AMR][1000 genomes]
rs12089522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12089583	1.00[AMR][1000 genomes]
rs12089730	1.00[AMR][1000 genomes]
rs12090598	1.00[AMR][1000 genomes]
rs12092799	1.00[AMR][1000 genomes]
rs12093156	1.00[AMR][1000 genomes]
rs12093933	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12094697	1.00[AMR][1000 genomes]
rs12095275	1.00[AMR][1000 genomes]
rs12095957	1.00[AMR][1000 genomes]
rs12096142	1.00[AMR][1000 genomes]
rs12097202	1.00[AMR][1000 genomes]
rs57004467	1.00[AMR][1000 genomes]
rs59193426	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv3777	chr1:180741213-180780313	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180713000-180814200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:180715400-180747600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:180722600-180751000	Weak transcription	Left Ventricle	heart
4	chr1:180738000-180751200	Weak transcription	Brain Anterior Caudate	brain
5	chr1:180740200-180751000	Weak transcription	Fetal Brain Female	brain
6	chr1:180740200-180753000	Weak transcription	Small Intestine	intestine
7	chr1:180740200-180761000	Weak transcription	Psoas Muscle	Psoas
8	chr1:180740800-180775600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:180741000-180757200	Weak transcription	Primary B cells from cord blood	blood
10	chr1:180741600-180784000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:180742000-180743400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:180742000-180743400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr1:180742200-180742600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:180742200-180742600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr1:180742200-180742600	Enhancers	HSMMtube	muscle
16	chr1:180742200-180742800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:180742200-180743000	Enhancers	HMEC	breast
18	chr1:180742200-180743000	Enhancers	HUVEC	blood vessel
19	chr1:180742200-180743200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:180742200-180743200	Enhancers	NH-A	brain
21	chr1:180742200-180743200	Enhancers	NHDF-Ad	bronchial
22	chr1:180742200-180743400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:180742200-180743400	Genic enhancers	HSMM	muscle
24	chr1:180742200-180743400	Enhancers	Osteobl	bone
25	chr1:180742400-180742600	Enhancers	NHLF	lung
26	chr1:180742400-180742800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr1:180742400-180742800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr1:180742400-180742800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:180742400-180743000	Enhancers	A549	lung
30	chr1:180742400-180743200	Enhancers	NHEK	skin
31	chr1:180742400-180743400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links