Variant report

Variant	rs10915831
Chromosome Location	chr1:225646538-225646539
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:225646024..225648970-chr1:225656905..225658780,2	K562	blood:
2	chr1:225632782..225636036-chr1:225646050..225649453,3	K562	blood:
3	chr1:225646305..225648757-chr1:225649524..225652760,3	K562	blood:
4	chr1:225646346..225648004-chr1:225649524..225651043,2	K562	blood:
5	chr1:225643057..225644646-chr1:225644837..225647180,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10799310	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10799312	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs10915832	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10915836	0.87[ASN][1000 genomes]
rs11588279	0.92[CHB][hapmap]
rs12032961	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs12034829	0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12071529	0.83[EUR][1000 genomes]
rs12742313	0.83[ASN][1000 genomes]
rs1340865	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs1340867	0.82[CHB][hapmap]
rs1890999	0.84[EUR][1000 genomes]
rs1891000	0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2039620	0.83[ASN][1000 genomes]
rs2066233	0.92[CHB][hapmap]
rs2185528	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766930	1.00[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs3893032	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs4233220	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4554690	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4653638	0.91[CEU][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes]
rs4653640	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs499782	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6426075	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6692054	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6696038	0.92[CHB][hapmap]
rs6702641	0.87[ASN][1000 genomes]
rs72750896	0.86[EUR][1000 genomes]
rs7522622	0.84[ASN][1000 genomes]
rs7527014	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7527184	0.81[ASN][1000 genomes]
rs7536925	0.83[ASN][1000 genomes]
rs7548473	0.83[ASN][1000 genomes]
rs7550784	0.83[ASN][1000 genomes]
rs9725758	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832714	chr1:225592333-225805396	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1004851	chr1:225614140-225684184	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv34905	chr1:225631404-225676582	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225634600-225648400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr1:225635000-225647800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:225636200-225650000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:225637800-225647600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr1:225637800-225648400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr1:225639400-225647000	Weak transcription	Esophagus	oesophagus
7	chr1:225639400-225648000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr1:225642400-225647800	Weak transcription	Lung	lung
9	chr1:225642400-225650800	Weak transcription	Right Atrium	heart
10	chr1:225642400-225653000	Weak transcription	Primary B cells from cord blood	blood
11	chr1:225642400-225655200	Weak transcription	Small Intestine	intestine
12	chr1:225642600-225647200	Weak transcription	Thymus	Thymus
13	chr1:225642600-225647800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr1:225642600-225655000	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:225642800-225647600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr1:225642800-225647600	Weak transcription	Fetal Stomach	stomach
17	chr1:225642800-225647800	Weak transcription	HUVEC	blood vessel
18	chr1:225642800-225648000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr1:225642800-225648800	Weak transcription	Pancreas	Pancrea
20	chr1:225642800-225650000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:225642800-225652800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr1:225643000-225647000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr1:225643000-225647000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:225643000-225647000	Weak transcription	NHLF	lung
25	chr1:225643000-225647200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr1:225643000-225647400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr1:225643000-225647600	Weak transcription	A549	lung
28	chr1:225643000-225648000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr1:225643000-225648400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr1:225643000-225648400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr1:225643000-225648600	Weak transcription	Stomach Mucosa	stomach
32	chr1:225643000-225650400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:225643000-225651000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr1:225643200-225647000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:225643200-225647000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr1:225643200-225647000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr1:225643200-225647000	Weak transcription	HMEC	breast
38	chr1:225643200-225647000	Weak transcription	NHDF-Ad	bronchial
39	chr1:225643200-225647000	Weak transcription	NHEK	skin
40	chr1:225643200-225647800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr1:225643200-225648000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr1:225643200-225648000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr1:225643400-225647400	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr1:225643400-225647800	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr1:225644600-225647200	Enhancers	Colon Smooth Muscle	Colon
46	chr1:225645400-225646600	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr1:225645600-225648000	Enhancers	Rectal Smooth Muscle	rectum
48	chr1:225645800-225646600	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr1:225645800-225646600	Enhancers	HSMMtube	muscle
50	chr1:225645800-225648200	Enhancers	Hela-S3	cervix

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