Variant report

Variant	rs10915922
Chromosome Location	chr1:226234553-226234554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:226228777..226230781-chr1:226233649..226235450,2	K562	blood:
2	chr1:226230974..226235465-chr1:226248759..226251188,4	MCF-7	breast:
3	chr1:226186881..226188949-chr1:226234409..226236523,2	MCF-7	breast:
4	chr1:226220194..226222275-chr1:226233955..226236306,2	K562	blood:

Variant related genes	Relation type
ENSG00000272562	Chromatin interaction
ENSG00000163041	Chromatin interaction
ENSG00000143751	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10915928	0.83[AFR][1000 genomes]
rs12132050	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138509	0.83[AFR][1000 genomes]
rs12754943	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4653709	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7538781	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832747	chr1:226194143-226373415	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226222400-226242200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr1:226222600-226241400	Weak transcription	Liver	Liver
3	chr1:226222600-226242600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:226222600-226248600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:226223000-226242000	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:226223600-226234600	Weak transcription	K562	blood
7	chr1:226223800-226238400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr1:226223800-226242400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:226224200-226235200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:226225400-226242400	Weak transcription	Fetal Brain Female	brain
11	chr1:226226000-226248000	Weak transcription	Left Ventricle	heart
12	chr1:226228000-226235000	Weak transcription	Brain Hippocampus Middle	brain
13	chr1:226228800-226242200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr1:226229600-226241800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr1:226229600-226248200	Weak transcription	Brain Germinal Matrix	brain
16	chr1:226229800-226249400	Weak transcription	Spleen	Spleen
17	chr1:226230000-226249200	Weak transcription	Aorta	Aorta
18	chr1:226231000-226241600	Weak transcription	Fetal Thymus	thymus
19	chr1:226231200-226242200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr1:226231200-226242400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr1:226231200-226249200	Weak transcription	Pancreas	Pancrea
22	chr1:226232000-226249200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr1:226232200-226249400	Weak transcription	Gastric	stomach
24	chr1:226232600-226248600	Weak transcription	Brain Substantia Nigra	brain
25	chr1:226232800-226234600	Weak transcription	Ovary	ovary
26	chr1:226232800-226235200	Weak transcription	Primary B cells from cord blood	blood
27	chr1:226232800-226235200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr1:226232800-226242000	Weak transcription	Thymus	Thymus
29	chr1:226233000-226234600	Weak transcription	HSMMtube	muscle
30	chr1:226233000-226235000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr1:226233200-226234600	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr1:226233200-226235200	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr1:226233600-226234600	Enhancers	Muscle Satellite Cultured Cells	--
34	chr1:226233600-226234600	Enhancers	NHEK	skin
35	chr1:226233600-226234800	Enhancers	HMEC	breast
36	chr1:226233600-226235000	Enhancers	Fetal Intestine Large	intestine
37	chr1:226233600-226235200	Enhancers	Stomach Mucosa	stomach
38	chr1:226233600-226235200	Enhancers	HepG2	liver
39	chr1:226233600-226235400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr1:226233600-226235400	Enhancers	Duodenum Mucosa	Duodenum
41	chr1:226233600-226235600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr1:226233600-226235600	Enhancers	Fetal Intestine Small	intestine
43	chr1:226233600-226235600	Enhancers	Osteobl	bone
44	chr1:226233600-226235800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr1:226233800-226234600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr1:226233800-226234600	Weak transcription	A549	lung
47	chr1:226233800-226234600	Enhancers	HSMM	muscle
48	chr1:226233800-226234600	Enhancers	NH-A	brain
49	chr1:226233800-226235800	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr1:226234000-226235200	Enhancers	NHDF-Ad	bronchial

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