Variant report

Variant	rs10915934
Chromosome Location	chr1:226281884-226281885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:226249105..226251739-chr1:226280324..226283853,3	K562	blood:
2	chr1:226280725..226282904-chr1:226296101..226298427,2	MCF-7	breast:
3	chr1:226248891..226251543-chr1:226280324..226282713,4	K562	blood:
4	chr1:226280924..226283749-chr1:226285307..226289660,6	K562	blood:
5	chr1:226280306..226283507-chr1:226285698..226289497,4	K562	blood:
6	chr1:226278286..226279796-chr1:226279889..226282591,2	K562	blood:
7	chr1:226186298..226189954-chr1:226281552..226283753,3	K562	blood:
8	chr1:226281557..226283150-chr1:226286865..226289299,2	MCF-7	breast:
9	chr1:226269153..226271287-chr1:226280169..226282555,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10915933	0.86[ASN][1000 genomes]
rs10915936	0.83[EUR][1000 genomes]
rs11577282	0.91[EUR][1000 genomes]
rs12026319	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12117683	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12117819	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12121071	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12131977	0.81[ASN][1000 genomes]
rs12144544	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1355391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6693755	0.81[EUR][1000 genomes]
rs7515023	0.83[EUR][1000 genomes]
rs7552463	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832747	chr1:226194143-226373415	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv873232	chr1:226242772-226375267	Active TSS Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
3	esv1792510	chr1:226277560-226323824	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10915934	H3F3A	cis	Adipose Subcutaneous	GTEx
rs10915934	H3F3A	cis	Skin Sun Exposed Lower leg	GTEx
rs10915934	H3F3A	cis	Esophagus Mucosa	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226271800-226286200	Weak transcription	Ovary	ovary
2	chr1:226271800-226288000	Weak transcription	Right Atrium	heart
3	chr1:226271800-226288400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:226272000-226282200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr1:226272000-226285400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:226272000-226287800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:226272000-226288200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:226277400-226284000	Weak transcription	NHEK	skin
9	chr1:226278800-226287600	Weak transcription	Brain Anterior Caudate	brain
10	chr1:226281200-226295000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:226281400-226285400	Weak transcription	K562	blood
12	chr1:226281600-226284000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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