Variant report

Variant	rs10916036
Chromosome Location	chr1:226959301-226959302
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10916034	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11577480	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11581975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12738771	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1295645	1.00[LWK][hapmap]
rs2855563	1.00[LWK][hapmap]
rs4653466	1.00[EUR][1000 genomes]
rs6700213	0.99[EUR][1000 genomes]
rs6703275	1.00[EUR][1000 genomes]
rs835661	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997468	chr1:226858660-226975311	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv535316	chr1:226858660-226975311	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226952400-226960200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:226955600-226960000	Weak transcription	Brain Substantia Nigra	brain
3	chr1:226956800-226966200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:226957000-226960000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:226957800-226960200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:226958200-226959600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:226958800-226959800	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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