Variant report

Variant	rs10917768
Chromosome Location	chr1:161689105-161689106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:23)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:23 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXM1	chr1:161688464-161689279	GM12878	blood:	n/a	n/a
2	SPI1	chr1:161688465-161689107	GM12891	blood:	n/a	n/a
3	ATF2	chr1:161688413-161689260	GM12878	blood:	n/a	n/a
4	PML	chr1:161688280-161689306	GM12878	blood:	n/a	n/a
5	TBL1XR1	chr1:161688434-161689118	GM12878	blood:	n/a	n/a
6	RELA	chr1:161688417-161689343	GM19099	blood:	n/a	n/a
7	NFIC	chr1:161688329-161689129	GM12878	blood:	n/a	n/a
8	IRF4	chr1:161688526-161689430	GM12878	blood:	n/a	n/a
9	BCLAF1	chr1:161688469-161689202	GM12878	blood:	n/a	n/a
10	CEBPB	chr1:161688433-161689415	GM12878	blood:	n/a	n/a
11	STAT1	chr1:161688773-161689130	GM12878	blood:	n/a	n/a
12	RCOR1	chr1:161688516-161689345	GM12878	blood:	n/a	n/a
13	SPI1	chr1:161688270-161689328	GM12878	blood:	n/a	n/a
14	NFIC	chr1:161688368-161689385	GM12878	blood:	n/a	n/a
15	EP300	chr1:161688562-161689309	GM12878	blood:	n/a	n/a
16	MXI1	chr1:161688464-161689253	GM12878	blood:	n/a	n/a
17	BATF	chr1:161688608-161689324	GM12878	blood:	n/a	n/a
18	IKZF1	chr1:161688544-161689254	GM12878	blood:	n/a	n/a
19	BATF	chr1:161688480-161689390	GM12878	blood:	n/a	n/a
20	RUNX3	chr1:161688356-161689360	GM12878	blood:	n/a	n/a
21	ATF2	chr1:161688555-161689344	GM12878	blood:	n/a	n/a
22	CUX1	chr1:161688631-161689266	GM12878	blood:	n/a	n/a
23	MTA3	chr1:161688349-161689368	GM12878	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:161682680..161684961-chr1:161687579..161689831,2	MCF-7	breast:

No data

Variant related genes	Relation type
FCRLB	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12078337	1.00[YRI][hapmap]
rs12093206	0.84[AFR][1000 genomes]
rs12095962	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs2089084	1.00[CHB][hapmap]
rs60986778	0.90[AFR][1000 genomes]
rs61741806	0.95[AFR][1000 genomes]
rs73017404	0.90[AFR][1000 genomes]
rs73017406	0.90[AFR][1000 genomes]
rs7532925	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428257	chr1:161406315-161868263	Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv33393	chr1:161478681-162080327	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv464184	chr1:161646807-161885352	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv548075	chr1:161646807-161885352	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161676200-161692000	Weak transcription	Spleen	Spleen
2	chr1:161682600-161689600	Weak transcription	K562	blood
3	chr1:161688400-161689200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr1:161688400-161689400	Flanking Active TSS	GM12878-XiMat	blood
5	chr1:161688800-161689400	Enhancers	Adipose Nuclei	Adipose
6	chr1:161688800-161690600	Enhancers	Primary B cells from peripheral blood	blood
7	chr1:161688800-161691400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:161689000-161690000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:161689000-161690800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr1:161689000-161692400	Enhancers	Primary B cells from cord blood	blood
11	chr1:161689000-161692600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
12	chr1:161689000-161695400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr1:161689000-161695600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links