Variant report

Variant	rs10918029
Chromosome Location	chr1:161795896-161795897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:161794776..161796466-chr1:161808863..161811372,2	K562	blood:
2	chr1:161778182..161779848-chr1:161793768..161796616,2	K562	blood:

Variant related genes	Relation type
ENSG00000118217	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10399867	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10436881	0.92[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs10494357	0.86[ASN][1000 genomes]
rs1063179	0.92[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap]
rs10800032	0.87[ASN][1000 genomes]
rs10800079	0.81[ASN][1000 genomes]
rs10917835	0.84[LWK][hapmap];0.81[YRI][hapmap]
rs10917867	0.82[CHB][hapmap]
rs10917876	0.92[CHB][hapmap];0.81[CHD][hapmap];0.81[ASN][1000 genomes]
rs10917968	0.83[ASN][1000 genomes]
rs12042663	0.99[ASN][1000 genomes]
rs12045320	0.86[ASN][1000 genomes]
rs12078104	0.92[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs12079579	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12081397	0.87[ASN][1000 genomes]
rs12086247	0.92[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs12097712	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12691498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1394066	0.86[ASN][1000 genomes]
rs1503815	0.84[ASN][1000 genomes]
rs1875762	0.84[ASN][1000 genomes]
rs3767636	0.86[ASN][1000 genomes]
rs3767637	0.86[ASN][1000 genomes]
rs60578284	0.96[ASN][1000 genomes]
rs6427632	0.86[ASN][1000 genomes]
rs6657266	0.84[CHB][hapmap];0.82[JPT][hapmap];0.84[LWK][hapmap];0.81[YRI][hapmap]
rs6660014	0.80[ASN][1000 genomes]
rs6698956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7355188	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7516955	0.81[ASN][1000 genomes]
rs7518743	0.84[ASN][1000 genomes]
rs7529274	0.86[CHB][hapmap]
rs9970071	0.84[LWK][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428257	chr1:161406315-161868263	Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv33393	chr1:161478681-162080327	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv464184	chr1:161646807-161885352	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv548075	chr1:161646807-161885352	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10918029	DUSP12	cis	lymphoblastoid	seeQTL

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161753400-161800600	Weak transcription	Spleen	Spleen
2	chr1:161757400-161797000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:161762800-161797600	Weak transcription	HMEC	breast
4	chr1:161763000-161797400	Weak transcription	NHLF	lung
5	chr1:161773400-161797200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:161773400-161854400	Weak transcription	Small Intestine	intestine
7	chr1:161780200-161797200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:161780400-161798800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr1:161780400-161824400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:161780600-161798800	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr1:161780600-161808200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:161780600-161823400	Weak transcription	A549	lung
13	chr1:161780600-161836600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:161780800-161797600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:161780800-161798200	Weak transcription	Psoas Muscle	Psoas
16	chr1:161780800-161812400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr1:161780800-161823000	Weak transcription	HSMMtube	muscle
18	chr1:161780800-161825800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:161780800-161834000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:161781000-161823000	Weak transcription	Fetal Kidney	kidney
21	chr1:161781200-161796600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr1:161781400-161801000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr1:161785400-161822400	Weak transcription	Fetal Intestine Small	intestine
24	chr1:161786000-161797000	Weak transcription	Osteobl	bone
25	chr1:161786800-161797000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:161786800-161797200	Weak transcription	Hela-S3	cervix
27	chr1:161787400-161804600	Weak transcription	NHDF-Ad	bronchial
28	chr1:161787600-161797000	Weak transcription	Fetal Heart	heart
29	chr1:161787600-161809800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr1:161787600-161821000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr1:161788800-161796400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr1:161789600-161798800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr1:161789800-161798800	Strong transcription	Primary T cells from cord blood	blood
34	chr1:161790200-161816000	Weak transcription	NHEK	skin
35	chr1:161791400-161823000	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr1:161791600-161797000	Weak transcription	NH-A	brain
37	chr1:161791600-161805200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr1:161791600-161812800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr1:161791600-161816200	Weak transcription	HepG2	liver
40	chr1:161791600-161823000	Weak transcription	Fetal Lung	lung
41	chr1:161791800-161797400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr1:161791800-161798000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr1:161791800-161808200	Weak transcription	Right Ventricle	heart
44	chr1:161791800-161819800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr1:161791800-161820800	Weak transcription	Brain Hippocampus Middle	brain
46	chr1:161791800-161822400	Weak transcription	Thymus	Thymus
47	chr1:161791800-161823000	Weak transcription	Fetal Brain Female	brain
48	chr1:161791800-161823600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr1:161791800-161842000	Weak transcription	Brain Angular Gyrus	brain
50	chr1:161792000-161822400	Weak transcription	Aorta	Aorta

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