Variant report

Variant	rs10918295
Chromosome Location	chr1:165825133-165825134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165795539..165799937-chr1:165823038..165829386,11	MCF-7	breast:
2	chr1:165818712..165822734-chr1:165823086..165826851,4	MCF-7	breast:
3	chr1:165738096..165740327-chr1:165822815..165825258,2	MCF-7	breast:
4	chr1:165824047..165827978-chr1:165829041..165832736,3	K562	blood:
5	chr1:165796460..165798954-chr1:165824565..165827168,2	K562	blood:
6	chr1:165810645..165813480-chr1:165823292..165825548,2	K562	blood:
7	chr1:165804707..165809840-chr1:165822123..165825220,4	K562	blood:

Variant related genes	Relation type
ENSG00000224358	Chromatin interaction
ENSG00000143179	Chromatin interaction
ENSG00000143183	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10753694	0.83[AFR][1000 genomes]
rs6690966	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	esv2830094	chr1:165785503-165840411	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases
3	nsv548097	chr1:165797966-165825166	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
4	esv2755529	chr1:165813862-165858354	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv437246	chr1:165822891-165860813	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10918295	NOS1AP	cis	cerebellum	SCAN

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165818000-165829200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:165818600-165828000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:165818800-165826600	Weak transcription	Esophagus	oesophagus
4	chr1:165819000-165826000	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:165819000-165826200	Weak transcription	Stomach Mucosa	stomach
6	chr1:165820200-165825800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr1:165820400-165825200	Enhancers	Fetal Heart	heart
8	chr1:165820400-165827600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:165820800-165828000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:165821000-165825800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr1:165821000-165832200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:165821400-165827200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr1:165821600-165825800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr1:165821600-165826200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:165821800-165825400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr1:165821800-165826000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr1:165821800-165827800	Enhancers	NHLF	lung
18	chr1:165821800-165828000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr1:165821800-165829400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr1:165822000-165828200	Enhancers	NHDF-Ad	bronchial
21	chr1:165822200-165826200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr1:165822200-165827400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:165822200-165827600	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr1:165822400-165825800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr1:165822400-165826200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr1:165822800-165826200	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr1:165823000-165825800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr1:165823200-165825200	Enhancers	Placenta	Placenta
29	chr1:165823200-165827200	Enhancers	Primary hematopoietic stem cells	blood
30	chr1:165823600-165825800	Weak transcription	Adipose Nuclei	Adipose
31	chr1:165823600-165826000	Weak transcription	Liver	Liver
32	chr1:165823600-165826400	Weak transcription	Brain Angular Gyrus	brain
33	chr1:165823600-165828200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:165823600-165831200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr1:165823600-165833000	Weak transcription	Hela-S3	cervix
36	chr1:165823600-165834000	Weak transcription	Aorta	Aorta
37	chr1:165823600-165834600	Weak transcription	Fetal Stomach	stomach
38	chr1:165823800-165825400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr1:165823800-165825400	Weak transcription	Fetal Intestine Large	intestine
40	chr1:165823800-165825400	Weak transcription	NHEK	skin
41	chr1:165823800-165825600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr1:165823800-165825800	Enhancers	A549	lung
43	chr1:165823800-165826000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr1:165823800-165826000	Weak transcription	NH-A	brain
45	chr1:165823800-165826200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr1:165823800-165826200	Enhancers	HSMMtube	muscle
47	chr1:165823800-165826400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr1:165823800-165826400	Weak transcription	Gastric	stomach
49	chr1:165823800-165826400	Weak transcription	Right Ventricle	heart
50	chr1:165823800-165826400	Weak transcription	Small Intestine	intestine

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