Variant report

Variant	rs10918302
Chromosome Location	chr1:165853020-165853021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165850733..165853515-chr1:165853523..165855444,2	MCF-7	breast:
2	chr1:165843122..165847161-chr1:165847770..165853662,6	K562	blood:
3	chr1:165847454..165850029-chr1:165851841..165853502,3	K562	blood:
4	chr1:165851226..165853172-chr1:165855728..165858145,2	K562	blood:
5	chr1:165844323..165845929-chr1:165851824..165854208,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16851987	0.87[EUR][1000 genomes]
rs16852447	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4656464	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4656465	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4657489	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6661905	0.90[ASN][1000 genomes]
rs6687465	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7520107	0.92[AFR][1000 genomes]
rs7547020	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	esv2755529	chr1:165813862-165858354	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv437246	chr1:165822891-165860813	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165832400-165853400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:165841000-165853400	Weak transcription	Gastric	stomach
3	chr1:165845200-165860000	Weak transcription	Fetal Thymus	thymus
4	chr1:165845600-165854000	Weak transcription	Fetal Intestine Large	intestine
5	chr1:165845600-165854000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr1:165845600-165861600	Weak transcription	Thymus	Thymus
7	chr1:165846400-165853600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr1:165847000-165853200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr1:165847000-165856200	Weak transcription	K562	blood
10	chr1:165847000-165859800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:165847200-165853200	Weak transcription	Fetal Muscle Leg	muscle
12	chr1:165847400-165853600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:165847400-165859800	Weak transcription	NHDF-Ad	bronchial
14	chr1:165847800-165854200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr1:165848200-165860000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr1:165848400-165853600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr1:165848600-165853200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr1:165849200-165853400	Enhancers	HepG2	liver
19	chr1:165849200-165855400	Enhancers	Fetal Heart	heart
20	chr1:165849600-165853400	Weak transcription	Brain Anterior Caudate	brain
21	chr1:165849600-165853400	Weak transcription	Brain Substantia Nigra	brain
22	chr1:165849800-165853200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr1:165849800-165853400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr1:165849800-165853400	Weak transcription	HSMMtube	muscle
25	chr1:165849800-165856800	Enhancers	Stomach Mucosa	stomach
26	chr1:165850000-165853200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:165850800-165853400	Strong transcription	Dnd41	blood
28	chr1:165850800-165853600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr1:165851000-165853200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr1:165851200-165854400	Enhancers	Left Ventricle	heart
31	chr1:165851200-165854600	Enhancers	A549	lung
32	chr1:165851400-165859400	Weak transcription	Aorta	Aorta
33	chr1:165851600-165853400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr1:165851600-165853600	Enhancers	HUVEC	blood vessel
35	chr1:165851600-165855000	Enhancers	Primary hematopoietic stem cells	blood
36	chr1:165851600-165860000	Weak transcription	NH-A	brain
37	chr1:165851800-165853200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr1:165851800-165853800	Enhancers	NHEK	skin
39	chr1:165851800-165854200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr1:165851800-165854200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr1:165851800-165854600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr1:165851800-165855000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr1:165852000-165853200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr1:165852000-165853400	Weak transcription	Right Ventricle	heart
45	chr1:165852000-165854400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr1:165852000-165858000	Enhancers	GM12878-XiMat	blood
47	chr1:165852200-165853800	Enhancers	HMEC	breast
48	chr1:165852200-165854000	Weak transcription	Hela-S3	cervix
49	chr1:165852200-165854200	Enhancers	Esophagus	oesophagus
50	chr1:165852200-165854600	Enhancers	Primary monocytes fromperipheralblood	blood

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