Variant report

Variant	rs10918489
Chromosome Location	chr1:166461251-166461252
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10918496	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10918497	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10918499	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10918500	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12047562	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12097144	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12565431	0.83[AMR][1000 genomes]
rs2172715	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5018542	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs5018543	0.82[ASN][1000 genomes]
rs74119753	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv946484	chr1:166458528-166461650	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166460200-166461600	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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