Variant report

Variant	rs10918565
Chromosome Location	chr1:166669584-166669585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10918567	0.84[ASN][1000 genomes]
rs12074945	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17472904	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2119900	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34311259	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3856217	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4657571	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4657581	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6676923	0.88[AFR][1000 genomes]
rs7531612	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv2752389	chr1:166625342-166706342	Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv947550	chr1:166647096-166673303	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166667600-166669600	Enhancers	K562	blood
2	chr1:166668800-166672200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:166669000-166670200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:166669200-166670200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links