Variant report

Variant	rs10919014
Chromosome Location	chr1:168886866-168886867
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168884605..168887295-chr1:168929904..168931983,2	MCF-7	breast:
2	chr1:168881835..168884881-chr1:168885530..168888220,3	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10800395	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168879200-168890400	Weak transcription	Aorta	Aorta
2	chr1:168882200-168887600	Weak transcription	Pancreas	Pancrea
3	chr1:168883400-168888200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:168884000-168887200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:168884000-168888200	Weak transcription	Brain Germinal Matrix	brain
6	chr1:168884200-168887000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:168884200-168887400	Weak transcription	Left Ventricle	heart
8	chr1:168884400-168889800	Weak transcription	Psoas Muscle	Psoas
9	chr1:168885600-168888200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:168886200-168890600	Enhancers	HMEC	breast
11	chr1:168886400-168888600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:168886400-168889000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:168886400-168889400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:168886400-168889600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr1:168886600-168887000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:168886600-168887000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr1:168886600-168887000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr1:168886600-168887400	Enhancers	Fetal Lung	lung
19	chr1:168886600-168888800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:168886600-168889000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr1:168886600-168889400	Enhancers	H1 Cell Line	embryonic stem cell
22	chr1:168886800-168887000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr1:168886800-168888200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr1:168886800-168888200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr1:168886800-168889200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr1:168886800-168889200	Enhancers	Brain Anterior Caudate	brain
27	chr1:168886800-168890200	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr1:168886800-168890400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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