Variant report

Variant	rs10919435
Chromosome Location	chr1:170549887-170549888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12038857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12408432	0.80[EUR][1000 genomes]
rs12563881	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16863397	0.85[EUR][1000 genomes]
rs16863416	0.88[EUR][1000 genomes]
rs1928707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6661527	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6680284	0.82[EUR][1000 genomes]
rs71559505	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7519842	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9787312	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv533915	chr1:170258766-170725296	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170547200-170551200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:170548200-170550000	Weak transcription	Osteobl	bone
3	chr1:170548600-170550800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:170548800-170550400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:170549000-170550800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:170549400-170550800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:170549600-170550600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:170549600-170550600	Enhancers	NHDF-Ad	bronchial
9	chr1:170549800-170550200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:170549800-170550400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr1:170549800-170550400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr1:170549800-170550400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr1:170549800-170550600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr1:170549800-170550600	Enhancers	Aorta	Aorta
15	chr1:170549800-170550800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr1:170549800-170550800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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