Variant report

Variant	rs10921216
Chromosome Location	chr1:192583913-192583914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10921206	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10921207	0.97[EUR][1000 genomes]
rs10921211	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12069643	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12072785	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16834536	0.85[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs16834546	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6658249	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6692015	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6694644	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv467005	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv548659	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192582600-192585000	Enhancers	Dnd41	blood
2	chr1:192583800-192584000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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