Variant report

Variant	rs10921327
Chromosome Location	chr1:193190460-193190461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:193186479..193188136-chr1:193189038..193191435,2	MCF-7	breast:
2	chr1:193189908..193192656-chr1:193195935..193198458,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10754051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs10921309	0.82[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs1539725	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6428156	0.82[CHD][hapmap]
rs6661522	0.87[CHD][hapmap];0.95[JPT][hapmap]
rs6697079	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832148	chr1:193143945-193292897	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv872831	chr1:193152317-193322087	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1001174	chr1:193186758-193363372	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10921327	CDC73	cis	cerebellum	SCAN
rs10921327	B3GALT2	cis	cerebellum	SCAN

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193155800-193243400	Weak transcription	Pancreas	Pancrea
2	chr1:193156200-193216800	Weak transcription	Aorta	Aorta
3	chr1:193159000-193210000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr1:193167800-193210400	Weak transcription	Ovary	ovary
5	chr1:193168000-193228400	Weak transcription	Stomach Mucosa	stomach
6	chr1:193169000-193190800	Weak transcription	Brain Anterior Caudate	brain
7	chr1:193170200-193191200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr1:193170400-193216000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr1:193176800-193203800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr1:193176800-193209200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr1:193177000-193206600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr1:193179400-193190800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr1:193180600-193200400	Weak transcription	Fetal Heart	heart
14	chr1:193180600-193231200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr1:193180800-193228200	Weak transcription	Small Intestine	intestine
16	chr1:193181000-193207400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr1:193181400-193190800	Weak transcription	Colon Smooth Muscle	Colon
18	chr1:193181400-193198200	Weak transcription	Hela-S3	cervix
19	chr1:193181800-193210400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr1:193181800-193232800	Weak transcription	Colonic Mucosa	Colon
21	chr1:193183400-193211000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr1:193183400-193216000	Weak transcription	NHEK	skin
23	chr1:193184200-193202200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr1:193184200-193209000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr1:193184400-193202000	Weak transcription	K562	blood
26	chr1:193184400-193227600	Weak transcription	HMEC	breast
27	chr1:193185000-193204200	Weak transcription	Fetal Kidney	kidney
28	chr1:193185400-193190800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr1:193185400-193204600	Weak transcription	NHDF-Ad	bronchial
30	chr1:193185400-193211000	Weak transcription	Fetal Brain Female	brain
31	chr1:193185400-193218200	Weak transcription	HepG2	liver
32	chr1:193185600-193194000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr1:193185600-193202200	Weak transcription	Osteobl	bone
34	chr1:193186200-193190600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr1:193186200-193190800	Weak transcription	Brain Substantia Nigra	brain
36	chr1:193186200-193198400	Weak transcription	Psoas Muscle	Psoas
37	chr1:193186200-193202000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr1:193186200-193202000	Weak transcription	NH-A	brain
39	chr1:193186200-193216600	Weak transcription	HUVEC	blood vessel
40	chr1:193186400-193190600	Weak transcription	Brain Hippocampus Middle	brain
41	chr1:193186600-193190800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr1:193186600-193198600	Weak transcription	Placenta	Placenta
43	chr1:193186600-193210600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr1:193186600-193216200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr1:193186800-193197400	Weak transcription	A549	lung
46	chr1:193186800-193202000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr1:193186800-193210400	Weak transcription	Lung	lung
48	chr1:193187000-193191200	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr1:193187000-193191400	Weak transcription	Brain Germinal Matrix	brain
50	chr1:193187000-193201800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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