Variant report

Variant	rs10921955
Chromosome Location	chr1:195817126-195817127
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:195815546..195818437-chr1:195820213..195822021,2	K562	blood:
2	chr1:195817026..195821248-chr1:195822021..195827460,5	K562	blood:

Extended variants
information (count: 231 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:220)

rs_ID	r²[population]
rs10436908	0.98[ASN][1000 genomes]
rs10737655	0.92[ASN][1000 genomes]
rs10737656	0.91[ASN][1000 genomes]
rs10737657	0.91[ASN][1000 genomes]
rs10737663	0.98[ASN][1000 genomes]
rs10737664	0.98[ASN][1000 genomes]
rs10737665	0.98[ASN][1000 genomes]
rs10754149	0.92[ASN][1000 genomes]
rs10754150	0.92[ASN][1000 genomes]
rs10754151	0.92[ASN][1000 genomes]
rs10754152	0.92[ASN][1000 genomes]
rs10754153	0.92[ASN][1000 genomes]
rs10754154	0.94[ASN][1000 genomes]
rs10754155	0.98[ASN][1000 genomes]
rs10754156	0.98[ASN][1000 genomes]
rs10754158	0.98[ASN][1000 genomes]
rs10754159	0.98[ASN][1000 genomes]
rs10754161	0.98[ASN][1000 genomes]
rs10754163	0.98[ASN][1000 genomes]
rs10754164	0.98[ASN][1000 genomes]
rs10754165	0.98[ASN][1000 genomes]
rs10754166	0.98[ASN][1000 genomes]
rs10754167	0.98[ASN][1000 genomes]
rs10801450	0.92[ASN][1000 genomes]
rs10801451	0.92[ASN][1000 genomes]
rs10801452	0.92[ASN][1000 genomes]
rs10801453	0.92[ASN][1000 genomes]
rs10801454	0.92[ASN][1000 genomes]
rs10801455	0.92[ASN][1000 genomes]
rs10801456	0.88[ASN][1000 genomes]
rs10801458	0.98[ASN][1000 genomes]
rs10801461	0.98[ASN][1000 genomes]
rs10801464	0.98[ASN][1000 genomes]
rs10801465	0.98[ASN][1000 genomes]
rs10801466	0.96[ASN][1000 genomes]
rs10801467	0.98[ASN][1000 genomes]
rs10801468	0.98[ASN][1000 genomes]
rs10801469	0.98[ASN][1000 genomes]
rs10801471	0.98[ASN][1000 genomes]
rs10801472	0.87[ASN][1000 genomes]
rs10801473	0.98[ASN][1000 genomes]
rs10801474	0.98[ASN][1000 genomes]
rs10801475	0.98[ASN][1000 genomes]
rs10801476	0.96[ASN][1000 genomes]
rs10801477	0.98[ASN][1000 genomes]
rs10921921	0.92[ASN][1000 genomes]
rs10921922	0.92[ASN][1000 genomes]
rs10921923	0.92[ASN][1000 genomes]
rs10921929	0.98[ASN][1000 genomes]
rs10921930	0.98[ASN][1000 genomes]
rs10921933	0.98[ASN][1000 genomes]
rs10921934	0.96[ASN][1000 genomes]
rs10921935	0.98[ASN][1000 genomes]
rs10921936	0.98[ASN][1000 genomes]
rs10921937	0.98[ASN][1000 genomes]
rs10921938	0.98[ASN][1000 genomes]
rs10921939	0.98[ASN][1000 genomes]
rs10921940	0.98[ASN][1000 genomes]
rs10921941	0.98[ASN][1000 genomes]
rs10921942	0.98[ASN][1000 genomes]
rs10921949	0.98[ASN][1000 genomes]
rs10921950	0.94[ASN][1000 genomes]
rs10921951	0.96[ASN][1000 genomes]
rs10921952	0.98[ASN][1000 genomes]
rs10921954	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10921958	0.98[ASN][1000 genomes]
rs10921959	0.98[ASN][1000 genomes]
rs10921960	0.98[ASN][1000 genomes]
rs10921961	0.98[ASN][1000 genomes]
rs11581892	0.98[ASN][1000 genomes]
rs11585686	0.98[ASN][1000 genomes]
rs12021959	0.98[ASN][1000 genomes]
rs12031297	0.98[ASN][1000 genomes]
rs12033878	0.98[ASN][1000 genomes]
rs12033909	0.98[ASN][1000 genomes]
rs12034298	0.98[ASN][1000 genomes]
rs12034411	0.98[ASN][1000 genomes]
rs12034444	0.98[ASN][1000 genomes]
rs12039564	0.98[ASN][1000 genomes]
rs12040356	0.98[ASN][1000 genomes]
rs12042722	0.98[ASN][1000 genomes]
rs12058917	0.98[ASN][1000 genomes]
rs12067826	0.82[ASN][1000 genomes]
rs12081890	0.98[ASN][1000 genomes]
rs12083144	0.98[ASN][1000 genomes]
rs12084932	0.98[ASN][1000 genomes]
rs12089361	0.98[ASN][1000 genomes]
rs12089437	0.94[ASN][1000 genomes]
rs12562966	0.92[ASN][1000 genomes]
rs12563650	0.92[ASN][1000 genomes]
rs12565826	0.98[ASN][1000 genomes]
rs12738902	0.86[ASN][1000 genomes]
rs1548294	0.90[ASN][1000 genomes]
rs1548295	0.90[ASN][1000 genomes]
rs2942912	0.84[ASN][1000 genomes]
rs2942914	0.84[ASN][1000 genomes]
rs2942915	0.86[ASN][1000 genomes]
rs2942916	0.92[ASN][1000 genomes]
rs2942917	0.92[ASN][1000 genomes]
rs2942926	0.84[ASN][1000 genomes]
rs2942927	0.84[ASN][1000 genomes]
rs2989982	0.84[ASN][1000 genomes]
rs2989984	0.84[ASN][1000 genomes]
rs2989985	0.84[ASN][1000 genomes]
rs2989987	0.92[ASN][1000 genomes]
rs3010164	0.84[ASN][1000 genomes]
rs3010165	0.86[ASN][1000 genomes]
rs3010166	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3010167	0.90[ASN][1000 genomes]
rs3010168	0.90[ASN][1000 genomes]
rs3010169	0.90[ASN][1000 genomes]
rs3010170	0.90[ASN][1000 genomes]
rs3010171	0.90[ASN][1000 genomes]
rs3010173	0.92[ASN][1000 genomes]
rs3010174	0.92[ASN][1000 genomes]
rs3010176	0.92[ASN][1000 genomes]
rs3010177	0.92[ASN][1000 genomes]
rs3010178	0.92[ASN][1000 genomes]
rs34167524	0.98[ASN][1000 genomes]
rs34435407	0.98[ASN][1000 genomes]
rs35172199	0.98[ASN][1000 genomes]
rs35278954	0.98[ASN][1000 genomes]
rs4130440	0.92[ASN][1000 genomes]
rs4256793	0.98[ASN][1000 genomes]
rs4256794	0.98[ASN][1000 genomes]
rs4266862	0.98[ASN][1000 genomes]
rs4269755	0.87[ASN][1000 genomes]
rs4272603	0.98[ASN][1000 genomes]
rs4276894	0.98[ASN][1000 genomes]
rs4294395	0.92[ASN][1000 genomes]
rs4313376	0.92[ASN][1000 genomes]
rs4330904	0.98[ASN][1000 genomes]
rs4345788	0.98[ASN][1000 genomes]
rs4350188	0.92[ASN][1000 genomes]
rs4351619	0.98[ASN][1000 genomes]
rs4353070	0.92[ASN][1000 genomes]
rs4367774	0.98[ASN][1000 genomes]
rs4390158	0.98[ASN][1000 genomes]
rs4390159	0.98[ASN][1000 genomes]
rs4390160	0.98[ASN][1000 genomes]
rs4393138	0.94[ASN][1000 genomes]
rs4394633	0.98[ASN][1000 genomes]
rs4402108	0.98[ASN][1000 genomes]
rs4408131	0.92[ASN][1000 genomes]
rs4415544	0.98[ASN][1000 genomes]
rs4424491	0.98[ASN][1000 genomes]
rs4436370	0.89[ASN][1000 genomes]
rs4436371	0.98[ASN][1000 genomes]
rs4436372	0.98[ASN][1000 genomes]
rs4440838	0.98[ASN][1000 genomes]
rs4443868	0.98[ASN][1000 genomes]
rs4460616	0.98[ASN][1000 genomes]
rs4462122	0.98[ASN][1000 genomes]
rs4465184	0.98[ASN][1000 genomes]
rs4466638	0.98[ASN][1000 genomes]
rs4469700	0.98[ASN][1000 genomes]
rs4475728	0.96[ASN][1000 genomes]
rs4484908	0.98[ASN][1000 genomes]
rs4488010	0.98[ASN][1000 genomes]
rs4489536	0.98[ASN][1000 genomes]
rs4495679	0.98[ASN][1000 genomes]
rs4501823	0.98[ASN][1000 genomes]
rs4504871	0.92[ASN][1000 genomes]
rs4504873	0.92[ASN][1000 genomes]
rs4512627	0.88[ASN][1000 genomes]
rs4518882	0.98[ASN][1000 genomes]
rs4520401	0.98[ASN][1000 genomes]
rs4521977	0.92[ASN][1000 genomes]
rs4523504	0.96[ASN][1000 genomes]
rs4525025	0.98[ASN][1000 genomes]
rs4532815	0.98[ASN][1000 genomes]
rs4537534	0.98[ASN][1000 genomes]
rs4539117	0.98[ASN][1000 genomes]
rs4548419	0.98[ASN][1000 genomes]
rs4604678	0.92[ASN][1000 genomes]
rs4607868	0.87[ASN][1000 genomes]
rs4612608	0.92[ASN][1000 genomes]
rs4631670	0.94[ASN][1000 genomes]
rs4634886	0.98[ASN][1000 genomes]
rs4657813	0.92[ASN][1000 genomes]
rs4991123	0.91[ASN][1000 genomes]
rs4991124	0.92[ASN][1000 genomes]
rs61820610	0.91[ASN][1000 genomes]
rs61820611	0.98[ASN][1000 genomes]
rs6428301	0.92[ASN][1000 genomes]
rs6428302	0.92[ASN][1000 genomes]
rs6428303	0.92[ASN][1000 genomes]
rs6428304	0.92[ASN][1000 genomes]
rs6428305	0.98[ASN][1000 genomes]
rs6428306	0.98[ASN][1000 genomes]
rs6428307	0.98[ASN][1000 genomes]
rs6428308	0.98[ASN][1000 genomes]
rs6428309	0.96[ASN][1000 genomes]
rs6655952	0.98[ASN][1000 genomes]
rs6658511	0.92[ASN][1000 genomes]
rs6676210	0.92[ASN][1000 genomes]
rs6679783	0.98[ASN][1000 genomes]
rs6679891	0.98[ASN][1000 genomes]
rs6681536	0.98[ASN][1000 genomes]
rs6682388	0.98[ASN][1000 genomes]
rs6683699	0.92[ASN][1000 genomes]
rs6686736	0.92[ASN][1000 genomes]
rs6691116	0.98[ASN][1000 genomes]
rs6691119	0.92[ASN][1000 genomes]
rs6699302	0.98[ASN][1000 genomes]
rs6702353	0.98[ASN][1000 genomes]
rs7411386	0.98[ASN][1000 genomes]
rs7520731	0.92[ASN][1000 genomes]
rs7522363	0.98[ASN][1000 genomes]
rs7522510	0.98[ASN][1000 genomes]
rs7523221	0.92[ASN][1000 genomes]
rs7530086	0.98[ASN][1000 genomes]
rs7541902	0.91[ASN][1000 genomes]
rs7542096	0.98[ASN][1000 genomes]
rs7542104	0.98[ASN][1000 genomes]
rs7553148	0.98[ASN][1000 genomes]
rs7553244	0.98[ASN][1000 genomes]
rs7554138	0.92[ASN][1000 genomes]
rs990924	0.90[ASN][1000 genomes]
rs990927	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv872941	chr1:195770204-195820337	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1014402	chr1:195792089-195877256	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1815602	chr1:195796224-195830040	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2762212	chr1:195797081-195820890	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2757765	chr1:195803764-196119454	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv2758989	chr1:195803764-196119454	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv470768	chr1:195804144-195872295	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv872942	chr1:195811203-195844389	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv872943	chr1:195811203-195849028	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195814400-195817800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr1:195814800-195818400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr1:195815000-195817800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:195815200-195817600	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr1:195815400-195817600	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr1:195815800-195817600	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr1:195815800-195818000	Active TSS	H9 Cell Line	embryonic stem cell
8	chr1:195816000-195817400	Active TSS	H1 Cell Line	embryonic stem cell
9	chr1:195816200-195817800	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr1:195816800-195817400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr1:195816800-195817600	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr1:195817000-195817400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr1:195817000-195817400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr1:195817000-195817800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr1:195817000-195817800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr1:195817000-195818000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:195817000-195818200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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