Variant report

Variant	rs10922079
Chromosome Location	chr1:196503684-196503685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10922070	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs12068827	1.00[YRI][hapmap]
rs12069715	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs12074844	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12077460	0.93[AFR][1000 genomes]
rs12081907	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196480800-196504800	Weak transcription	Liver	Liver
2	chr1:196492200-196504800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:196492400-196504200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:196492400-196504800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:196493600-196504000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:196497400-196504800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:196498000-196505000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:196501200-196504800	Weak transcription	Fetal Lung	lung
9	chr1:196502000-196504000	Weak transcription	NHDF-Ad	bronchial
10	chr1:196502800-196503800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:196502800-196504200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr1:196503600-196503800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr1:196503600-196509600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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