Variant report
| Variant | rs10923006 |
|---|---|
| Chromosome Location | chr1:91772397-91772398 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1034499 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10801849 | 0.86[AMR][1000 genomes] |
| rs10922991 | 0.86[AMR][1000 genomes] |
| rs10923008 | 0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12037980 | 0.85[EUR][1000 genomes] |
| rs12564233 | 0.81[JPT][hapmap] |
| rs172191 | 0.92[ASN][1000 genomes] |
| rs192519 | 0.82[JPT][hapmap] |
| rs204304 | 0.92[ASN][1000 genomes] |
| rs281934 | 0.86[ASN][1000 genomes] |
| rs281953 | 0.89[ASN][1000 genomes] |
| rs281973 | 0.93[ASN][1000 genomes] |
| rs281985 | 0.97[ASN][1000 genomes] |
| rs281990 | 0.90[JPT][hapmap] |
| rs281997 | 0.85[JPT][hapmap] |
| rs282000 | 0.94[ASN][1000 genomes] |
| rs282003 | 0.94[ASN][1000 genomes] |
| rs282056 | 0.86[ASN][1000 genomes] |
| rs282057 | 0.84[ASN][1000 genomes] |
| rs2893151 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3893101 | 0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs652168 | 0.83[AMR][1000 genomes] |
| rs664620 | 0.83[AMR][1000 genomes] |
| rs693299 | 0.90[ASN][1000 genomes] |
| rs7541566 | 0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9324372 | 0.82[JPT][hapmap] |
| rs9428007 | 0.83[AMR][1000 genomes] |
| rs9660466 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949516 | chr1:91644418-92109261 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | esv1800676 | chr1:91722083-91854389 | Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | esv1796351 | chr1:91722083-91872374 | Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 4 | nsv1006022 | chr1:91768640-91831196 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:91749000-91774600 | Weak transcription | Ovary | ovary |
