Variant report

Variant	rs10923578
Chromosome Location	chr1:119047161-119047162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10923589	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10923614	0.80[EUR][1000 genomes]
rs1146308	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1146311	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1146313	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1146315	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11590559	0.81[EUR][1000 genomes]
rs11590971	0.82[EUR][1000 genomes]
rs1951938	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4659103	0.82[EUR][1000 genomes]
rs60820425	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6660988	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6684700	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3494191	chr1:118772550-119719548	Enhancers Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv3494192	chr1:118772550-119719548	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1001757	chr1:118973624-119048181	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1004804	chr1:118975209-119048663	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1013186	chr1:119005483-119048663	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv432653	chr1:119030698-119079566	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv547613	chr1:119042243-119102839	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv432665	chr1:119043914-119079566	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:119046000-119047600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:119046000-119047600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr1:119046000-119047800	Enhancers	Fetal Lung	lung
4	chr1:119046200-119048000	Enhancers	Fetal Heart	heart
5	chr1:119046200-119049000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:119046400-119047200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:119046400-119047400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr1:119046400-119048200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:119046600-119047200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:119046800-119047200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:119046800-119047400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr1:119046800-119047400	Enhancers	Fetal Stomach	stomach
13	chr1:119046800-119047400	Enhancers	Psoas Muscle	Psoas
14	chr1:119046800-119047800	Enhancers	Left Ventricle	heart
15	chr1:119046800-119047800	Enhancers	HSMMtube	muscle
16	chr1:119046800-119048800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr1:119046800-119049200	Enhancers	Fetal Muscle Leg	muscle
18	chr1:119047000-119047200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr1:119047000-119047200	Enhancers	Spleen	Spleen
20	chr1:119047000-119047400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr1:119047000-119047400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:119047000-119047400	Enhancers	Pancreas	Pancrea

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