Variant report
Variant | rs10928081 |
---|---|
Chromosome Location | chr2:141720640-141720641 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10201482 | 0.82[CHB][hapmap];0.86[JPT][hapmap] |
rs10928082 | 0.92[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.80[TSI][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs10928086 | 0.86[JPT][hapmap] |
rs12474609 | 0.92[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs12614087 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs12614115 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs12617569 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12620377 | 0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs16845014 | 0.81[CHB][hapmap] |
rs16845015 | 0.87[YRI][hapmap] |
rs16845029 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1820844 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1991540 | 0.81[YRI][hapmap] |
rs4954867 | 0.82[CHB][hapmap];0.86[JPT][hapmap] |
rs716000 | 0.91[CEU][hapmap];0.80[JPT][hapmap];0.81[YRI][hapmap] |
rs980286 | 0.82[CHB][hapmap];0.86[JPT][hapmap] |
rs980288 | 0.82[CHB][hapmap];0.86[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv583198 | chr2:141510791-142150620 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
2 | nsv1003008 | chr2:141518795-141763505 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv875208 | chr2:141657878-141795620 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
4 | nsv470490 | chr2:141688383-141721159 | Enhancers Active TSS ZNF genes & repeats Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv470489 | chr2:141688383-141731152 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv1014208 | chr2:141707558-141790148 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | nsv817518 | chr2:141714174-142287302 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
8 | nsv963176 | chr2:141719773-141722999 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:141719600-141721400 | Enhancers | Dnd41 | blood |
2 | chr2:141719600-141722000 | Weak transcription | Brain Angular Gyrus | brain |