Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10930993	0.82[ASN][1000 genomes]
rs10930995	0.85[ASN][1000 genomes]
rs10930996	0.85[ASN][1000 genomes]
rs10930997	0.87[ASN][1000 genomes]
rs10930999	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11681840	0.87[ASN][1000 genomes]
rs11687469	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12474371	0.86[EUR][1000 genomes]
rs12617420	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1481630	0.86[ASN][1000 genomes]
rs1594615	0.87[ASN][1000 genomes]
rs16822886	0.81[ASN][1000 genomes]
rs16822889	0.85[ASN][1000 genomes]
rs16822915	0.85[ASN][1000 genomes]
rs2568671	0.85[ASN][1000 genomes]
rs2568675	0.87[ASN][1000 genomes]
rs2623438	0.86[ASN][1000 genomes]
rs4666827	0.85[ASN][1000 genomes]
rs4666828	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs62190507	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62190508	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7567112	0.85[ASN][1000 genomes]
rs9784041	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1008825	chr2:183067339-183228668	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv536066	chr2:183067339-183228668	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183106400-183138400	Weak transcription	Aorta	Aorta
2	chr2:183113600-183138800	Weak transcription	Fetal Stomach	stomach
3	chr2:183124600-183128600	Weak transcription	Gastric	stomach
4	chr2:183124800-183130400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:183125400-183130000	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:183127000-183129200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:183127800-183129000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:183127800-183129200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr2:183128200-183128600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search: