Variant report

Variant	rs10931283
Chromosome Location	chr2:188211443-188211444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10174456	0.85[EUR][1000 genomes]
rs10179705	0.91[CEU][hapmap]
rs10203398	0.88[CEU][hapmap]
rs10931284	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10931285	0.80[CHB][hapmap]
rs11897572	0.88[CEU][hapmap]
rs11903296	0.87[CEU][hapmap]
rs13409829	0.86[EUR][1000 genomes]
rs13411274	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs13430354	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs13430665	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs1355519	0.88[CEU][hapmap]
rs1355520	0.88[CEU][hapmap]
rs1398061	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs1528233	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1609268	0.84[EUR][1000 genomes]
rs1632282	0.84[EUR][1000 genomes]
rs16829016	0.88[CEU][hapmap]
rs1706261	0.84[EUR][1000 genomes]
rs1706262	0.86[EUR][1000 genomes]
rs1706276	0.86[EUR][1000 genomes]
rs1728680	0.84[EUR][1000 genomes]
rs1728690	0.84[EUR][1000 genomes]
rs1912848	0.88[CEU][hapmap]
rs1983492	0.86[EUR][1000 genomes]
rs2030976	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs2349315	0.92[CEU][hapmap]
rs3213739	0.88[CHB][hapmap]
rs3771059	0.88[CEU][hapmap]
rs3771061	0.85[CEU][hapmap]
rs3771078	0.92[CEU][hapmap]
rs3821180	0.92[CEU][hapmap]
rs3821184	0.92[CEU][hapmap]
rs59400383	0.82[EUR][1000 genomes]
rs6434219	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs6719550	0.92[CEU][hapmap]
rs6744012	0.82[EUR][1000 genomes]
rs6753700	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs696092	0.96[CEU][hapmap];0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs698579	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs698582	0.86[EUR][1000 genomes]
rs698583	0.86[EUR][1000 genomes]
rs698588	0.84[EUR][1000 genomes]
rs698590	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs698592	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs698593	0.84[EUR][1000 genomes]
rs7586970	0.88[CEU][hapmap]
rs7589163	0.92[CEU][hapmap]
rs7591567	0.88[CEU][hapmap]
rs7598858	0.88[CEU][hapmap]
rs7601254	0.88[CHB][hapmap]
rs8176498	0.87[CEU][hapmap]
rs8176501	0.88[CEU][hapmap]
rs8176528	0.88[CEU][hapmap]
rs8176541	0.88[CEU][hapmap]
rs8176546	0.88[CEU][hapmap]
rs8176580	0.88[CEU][hapmap]
rs8176583	0.88[CEU][hapmap]
rs8176592	0.88[CEU][hapmap]
rs840583	0.88[EUR][1000 genomes]
rs840584	0.88[EUR][1000 genomes]
rs840585	0.88[EUR][1000 genomes]
rs840586	0.86[EUR][1000 genomes]
rs840587	0.86[EUR][1000 genomes]
rs840588	0.86[EUR][1000 genomes]
rs840589	0.88[EUR][1000 genomes]
rs840590	0.88[EUR][1000 genomes]
rs840591	0.82[EUR][1000 genomes]
rs840593	0.88[EUR][1000 genomes]
rs840595	0.86[EUR][1000 genomes]
rs840596	0.88[EUR][1000 genomes]
rs840597	0.86[EUR][1000 genomes]
rs840609	0.86[EUR][1000 genomes]
rs840611	0.84[EUR][1000 genomes]
rs840616	0.84[EUR][1000 genomes]
rs858744	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs858756	0.86[EUR][1000 genomes]
rs858758	0.85[EUR][1000 genomes]
rs858759	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs860846	0.86[EUR][1000 genomes]
rs860859	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs863972	0.86[EUR][1000 genomes]
rs880890	0.88[EUR][1000 genomes]
rs907463	0.86[EUR][1000 genomes]
rs9288140	0.92[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1003061	chr2:187950057-188282330	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1000617	chr2:187950057-188290511	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv533935	chr2:188089148-188284766	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv834487	chr2:188182556-188353363	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:188203200-188218200	Weak transcription	Aorta	Aorta
2	chr2:188203800-188222400	Weak transcription	Fetal Muscle Leg	muscle
3	chr2:188204000-188253600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr2:188204600-188213400	Weak transcription	Fetal Lung	lung
5	chr2:188206800-188213800	Strong transcription	HUVEC	blood vessel
6	chr2:188208800-188250400	Weak transcription	Primary T cells from cord blood	blood
7	chr2:188209000-188212000	Strong transcription	Primary hematopoietic stem cells	blood
8	chr2:188209000-188229600	Weak transcription	Fetal Thymus	thymus
9	chr2:188209200-188222600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr2:188209400-188213800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:188209600-188221400	Weak transcription	Fetal Kidney	kidney
12	chr2:188209800-188212200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:188209800-188233400	Weak transcription	Right Ventricle	heart
14	chr2:188210000-188212600	Weak transcription	Psoas Muscle	Psoas
15	chr2:188210200-188212200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr2:188210200-188212200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:188210600-188223200	Weak transcription	Left Ventricle	heart
18	chr2:188210800-188215400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:188210800-188248000	Weak transcription	HSMMtube	muscle
20	chr2:188211000-188213200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr2:188211000-188213800	Weak transcription	Adipose Nuclei	Adipose
22	chr2:188211000-188214000	Weak transcription	Ovary	ovary
23	chr2:188211400-188213800	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links