Variant report

Variant	rs10931365
Chromosome Location	chr2:189397151-189397152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:189396716..189399685-chr2:189460866..189462803,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10185493	1.00[AMR][1000 genomes]
rs10188279	1.00[AMR][1000 genomes]
rs10207510	0.81[YRI][hapmap]
rs10432433	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10804022	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11904835	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs13393442	0.81[YRI][hapmap]
rs13399616	0.91[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13403508	0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13411541	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13426900	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4667230	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4667232	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs6434282	0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6434283	0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6434284	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6434287	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs6736780	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6744742	0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6761280	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7423329	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs7423378	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs7580259	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7592288	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs7593824	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584055	chr2:189266823-189493686	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv834489	chr2:189329027-189494224	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv533110	chr2:189354436-189462552	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189329200-189399000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:189383200-189422000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:189383200-189423800	Weak transcription	Placenta	Placenta
4	chr2:189384800-189442200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:189387800-189404000	Weak transcription	A549	lung
6	chr2:189388200-189434000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr2:189392600-189397600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:189392600-189400600	Weak transcription	Ovary	ovary
9	chr2:189392600-189406800	Weak transcription	HUVEC	blood vessel
10	chr2:189393600-189397800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:189394000-189397400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:189394600-189402400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:189394800-189399200	Weak transcription	NHLF	lung
14	chr2:189395000-189397200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:189395000-189415600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr2:189395000-189421800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:189395000-189422200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr2:189395200-189400200	Weak transcription	Fetal Lung	lung
19	chr2:189395400-189421800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr2:189396000-189400000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr2:189396000-189402200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr2:189396000-189413000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr2:189397000-189397400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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