Variant report

Variant	rs1093306
Chromosome Location	chr12:117927135-117927136
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1068941	0.92[ASN][1000 genomes]
rs1093308	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1093310	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1093311	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1093312	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1103035	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117920800-117932800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:117924600-117931400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr12:117925400-117933200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr12:117925600-117928200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:117925600-117932600	Weak transcription	Pancreas	Pancrea
6	chr12:117925600-117933200	Weak transcription	Psoas Muscle	Psoas
7	chr12:117925600-117933200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr12:117925600-117933400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr12:117925800-117927400	Weak transcription	Osteobl	bone
10	chr12:117925800-117927600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:117926000-117932800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr12:117926400-117927800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:117926400-117932200	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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