Variant report

Variant	rs10934221
Chromosome Location	chr3:112869527-112869528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11712279	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12485676	0.90[ASN][1000 genomes]
rs16860599	0.87[CHB][hapmap];0.84[ASN][1000 genomes]
rs1881945	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1920081	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs28671320	0.84[ASN][1000 genomes]
rs34701192	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55705442	0.90[ASN][1000 genomes]
rs7630958	0.90[ASN][1000 genomes]
rs9822730	0.85[CHD][hapmap]
rs9830821	0.89[ASN][1000 genomes]
rs9845807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv829677	chr3:112857075-113038987	Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1003511	chr3:112858775-112989045	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112863400-112870600	Weak transcription	Left Ventricle	heart
2	chr3:112865200-112871400	Enhancers	Fetal Stomach	stomach
3	chr3:112865600-112870000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:112865600-112870000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:112865800-112870400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:112866400-112869800	Enhancers	Fetal Muscle Leg	muscle
7	chr3:112866800-112869600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:112867600-112869600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:112867600-112870400	Weak transcription	Small Intestine	intestine
10	chr3:112867600-112870600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:112867600-112870600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:112867600-112870600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:112867600-112871800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:112867600-112872200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:112867600-112872800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:112867800-112872200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:112867800-112872200	Weak transcription	NHEK	skin
18	chr3:112867800-112872400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:112867800-112872400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:112867800-112872400	Weak transcription	HMEC	breast
21	chr3:112867800-112872600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:112867800-112873200	Enhancers	Rectal Smooth Muscle	rectum
23	chr3:112868000-112871000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr3:112868000-112873400	Enhancers	Colon Smooth Muscle	Colon
25	chr3:112868200-112870000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr3:112868200-112870200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:112868200-112870600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr3:112868200-112871000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr3:112868200-112871400	Enhancers	Stomach Smooth Muscle	stomach
30	chr3:112868200-112874400	Weak transcription	Placenta	Placenta
31	chr3:112868400-112869800	Weak transcription	Fetal Intestine Small	intestine
32	chr3:112868800-112869600	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr3:112869000-112869600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:112869000-112869600	Enhancers	Spleen	Spleen
35	chr3:112869000-112869800	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr3:112869000-112871200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:112869000-112871600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:112869000-112872400	Enhancers	Adipose Nuclei	Adipose
39	chr3:112869000-112873000	Enhancers	Fetal Kidney	kidney
40	chr3:112869200-112869800	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr3:112869200-112870400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:112869400-112869600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr3:112869400-112869800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:112869400-112870200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr3:112869400-112870400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr3:112869400-112871000	Enhancers	Fetal Lung	lung
47	chr3:112869400-112871200	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links