Variant report

Variant	rs10935108
Chromosome Location	chr3:134014026-134014027
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10935107	0.85[EUR][1000 genomes]
rs10935109	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10935110	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11918596	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12630508	0.90[EUR][1000 genomes]
rs12639108	0.84[EUR][1000 genomes]
rs4535199	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7620294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625988	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7648456	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134010600-134018200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:134011000-134018400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:134012000-134014200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:134012000-134014200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr3:134012200-134014200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:134012200-134014400	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:134012800-134014400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr3:134013000-134014200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr3:134013600-134014200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr3:134013600-134014400	Enhancers	Primary T cells from cord blood	blood
11	chr3:134014000-134014200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:134014000-134014200	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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