Variant report

Variant	rs10935112
Chromosome Location	chr3:134032854-134032855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:134024378..134037377-chr3:134063304..134080412,83	MCF-7	breast:
2	chr3:134032429..134034030-chr3:134195239..134197108,2	MCF-7	breast:
3	chr3:134024307..134037207-chr3:134080573..134100993,88	MCF-7	breast:
4	chr3:134027625..134034860-chr3:134199305..134206618,11	MCF-7	breast:
5	chr3:134032463..134034261-chr3:134088924..134090604,2	K562	blood:

Variant related genes	Relation type
ENSG00000260633	Chromatin interaction
ENSG00000214289	Chromatin interaction
ENSG00000182923	Chromatin interaction
ENSG00000129055	Chromatin interaction
ENSG00000114019	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4269060	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4682662	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9849839	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854720	1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134026800-134034800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:134030000-134037200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:134030200-134034000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:134030800-134035000	Enhancers	Spleen	Spleen
5	chr3:134031600-134033000	Flanking Active TSS	Placenta	Placenta
6	chr3:134031600-134033800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:134031800-134033000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
8	chr3:134032000-134033000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:134032000-134033000	Flanking Active TSS	Fetal Muscle Trunk	muscle
10	chr3:134032000-134033800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:134032200-134034200	Flanking Active TSS	Osteobl	bone
12	chr3:134032400-134033000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:134032400-134033000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
14	chr3:134032400-134033000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:134032400-134033000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:134032400-134033000	Active TSS	Aorta	Aorta
17	chr3:134032400-134033000	Flanking Active TSS	Brain Anterior Caudate	brain
18	chr3:134032400-134033000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:134032400-134033000	Flanking Active TSS	Esophagus	oesophagus
20	chr3:134032400-134033000	Flanking Active TSS	Fetal Intestine Large	intestine
21	chr3:134032400-134033000	Flanking Active TSS	Left Ventricle	heart
22	chr3:134032400-134033000	Flanking Active TSS	Stomach Mucosa	stomach
23	chr3:134032400-134033000	Flanking Active TSS	HMEC	breast
24	chr3:134032400-134033000	Flanking Active TSS	HSMM	muscle
25	chr3:134032400-134033000	Flanking Active TSS	HUVEC	blood vessel
26	chr3:134032400-134033000	Flanking Active TSS	NH-A	brain
27	chr3:134032400-134033200	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:134032400-134033200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:134032400-134033200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr3:134032400-134033200	Flanking Active TSS	Fetal Heart	heart
31	chr3:134032400-134033200	Flanking Active TSS	Fetal Intestine Small	intestine
32	chr3:134032400-134033200	Flanking Active TSS	HSMMtube	muscle
33	chr3:134032400-134033400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:134032400-134033400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr3:134032400-134033400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:134032400-134033400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr3:134032400-134033400	Flanking Active TSS	NHEK	skin
38	chr3:134032400-134033600	Flanking Active TSS	Liver	Liver
39	chr3:134032400-134033600	Flanking Active TSS	NHDF-Ad	bronchial
40	chr3:134032400-134033600	Flanking Active TSS	NHLF	lung
41	chr3:134032400-134034000	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr3:134032400-134034200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr3:134032400-134034200	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr3:134032600-134033000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr3:134032600-134033000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
46	chr3:134032600-134033000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
47	chr3:134032600-134033000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
48	chr3:134032600-134033000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
49	chr3:134032600-134033000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
50	chr3:134032600-134033000	Flanking Active TSS	Brain Cingulate Gyrus	brain

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